PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.I02942.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | Dof | ||||||||
Protein Properties | Length: 247aa MW: 24847.8 Da PI: 9.3018 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 101.3 | 5.9e-32 | 79 | 133 | 5 | 59 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 ++cprC+s ntkfCyynnys +qPry+CkaCrr+Wt+GG+lr+vPvGggr++++ Pahal.I02942.1 79 PRQCPRCQSGNTKFCYYNNYSRAQPRYLCKACRRHWTEGGTLRDVPVGGGRKNRR 133 679**********************************************976554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 9.7E-30 | 80 | 132 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 25.9 | 80 | 134 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 82 | 118 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 4.0E-16 | 87 | 125 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MRSSFPTSPS SSASSHLSYL IPARPPAPPP PLAMGQGYCA AGGISVPASV AVDAAAAAAP 60 RQGARNAGAG HPPLPRPPPR QCPRCQSGNT KFCYYNNYSR AQPRYLCKAC RRHWTEGGTL 120 RDVPVGGGRK NRRGGNKGSA SAAKASASAD AAAMTQGGSA AVGADTFPDL LRQLVHFQPG 180 AAAVGGGGYA IDLSAWQQMA AATAPPQGTG EVSALGGAAA AEANCSALQY WGGWQQDDMP 240 GLDGAC* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025793526.1 | 1e-175 | dof zinc finger protein DOF1.6-like | ||||
TrEMBL | A0A2S3IL56 | 1e-174 | A0A2S3IL56_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia01590.1.p | 3e-75 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00940.1 | 2e-18 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.I02942.1 |