PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02922.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 267aa    MW: 29182.5 Da    PI: 9.6137
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02922.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.2e-15452148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd l+++ ++++G g +W + ++t+g++R++ +c+srw++yl
   Pahal.I02922.1  4 KGKWSKEEDSLIKNHIEKYGIGrSWQALSNTLGLRRCGRSCRSRWLNYL 52
                     79******************999************************97 PP
2Myb_DNA-binding30.58.2e-1059102247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g++T+ E+  + +   + G+  W+ Ia+ ++ gRt+  +k++w++ 
   Pahal.I02922.1  59 GNFTAAEERVICEMYSKRGSC-WSVIAAQLP-GRTDLAIKNYWNST 102
                      89******************9.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.948156IPR017930Myb domain
SMARTSM007171.6E-10354IPR001005SANT/Myb domain
SuperFamilySSF466895.08E-25399IPR009057Homeodomain-like
PfamPF002493.1E-12452IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-19559IPR009057Homeodomain-like
PROSITE profilePS5129414.68357107IPR017930Myb domain
SMARTSM007175.7E-957105IPR001005SANT/Myb domain
PfamPF002492.1E-859102IPR001005SANT/Myb domain
CDDcd001677.57E-760103No hitNo description
Gene3DG3DSA:1.10.10.602.1E-2060106IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MMKKGKWSKE EDSLIKNHIE KYGIGRSWQA LSNTLGLRRC GRSCRSRWLN YLRPGLKHGN  60
FTAAEERVIC EMYSKRGSCW SVIAAQLPGR TDLAIKNYWN STLRKKFPAA RTSAAAAYHR  120
RNRPACSTSS DAGTPARDLQ LVFYSSEESS TAGSSPAKPV LAGPTPVQAV QPPVPVVAAQ  180
PIAAAPVSGP VKIEQKQAVV SLPRLGKTPP PPPPPPRACD QTGERVMDIV CAPMSPAPLS  240
FMEPDELACI YQFDDIDSFL PWFDHH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-24210725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791626.11e-170myb-related protein Pp2-like
TrEMBLA0A2S3ILL50.0A0A2S3ILL5_9POAL; Uncharacterized protein
STRINGPavir.J36491.1.p1e-146(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122282638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.11e-32myb domain protein 87