PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I02802.4

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Trihelix

Protein Properties

Length: 565aa MW: 59921.9 Da PI: 5.7015

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I02802.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	110.3	1.2e-34	242	327	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r+++++r++++ k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a Pahal.I02802.4 242 RWPKAEVHALIQLRSNLDTRYQEAGPKGPLWEEISAGMRRMGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 327 8*******************************************************************8.99*********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0093	239	301	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-4	241	298	IPR009057	Homeodomain-like
Pfam	PF13837	4.7E-24	241	328	No hit	No description
CDD	cd12203	9.26E-30	241	306	No hit	No description
PROSITE profile	PS50090	7.155	241	299	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 565 aa Download sequence Send to blast
MPTMAFGNQM SFSTSNTEEY SDEEDSDDEG TQELGGGADE RGKRKRVSEG GGAASGGRSG 60 KMMRFFEGLM KQVMERQEAM QQRFLEAIEK REQDRMIREE AWRRQEMTRL AREQEILAQE 120 RAMAASRDAA VLSFIQKITG QTIPMPSIAA PTINAMPPPP HPKPPPPQPH PTAIASVSPA 180 APPPAQQPPA SQPPPAQQPQ QQRSPIPATP QQSTDIVMTP AETPHADTPG YDGSGGGPTS 240 SRWPKAEVHA LIQLRSNLDT RYQEAGPKGP LWEEISAGMR RMGYNRNAKR CKEKWENINK 300 YFKKVKESNK KRPEDSKTCP YFHQLDALYR NKAALSSSGA GGGGPAVHAS APSTQPQETV 360 TVTAAAPISQ TPPPPPPPTL PSQSSQHAAK NGGSSNAAGS GNGNGGGVSN RGASGGGSGG 420 TQAQASNGSV AASRFFGEGG AGAGGSASAA KKPEDIMKEM MEQRQPQPQA AVSGYNRIDG 480 ADSDNMDEDE DDYDDDDDDD DVDGNKMQFE IQFQRQHQPP PQHQHQNVVR PNSGAGASNP 540 PGTNAPSTAA AATTTAGSFL GMVQ*

Sequence ? help Back to Top

Protein Sequence Length: 565 aa Download sequence Send to blast

MPTMAFGNQM SFSTSNTEEY SDEEDSDDEG TQELGGGADE RGKRKRVSEG GGAASGGRSG  60
KMMRFFEGLM KQVMERQEAM QQRFLEAIEK REQDRMIREE AWRRQEMTRL AREQEILAQE  120
RAMAASRDAA VLSFIQKITG QTIPMPSIAA PTINAMPPPP HPKPPPPQPH PTAIASVSPA  180
APPPAQQPPA SQPPPAQQPQ QQRSPIPATP QQSTDIVMTP AETPHADTPG YDGSGGGPTS  240
SRWPKAEVHA LIQLRSNLDT RYQEAGPKGP LWEEISAGMR RMGYNRNAKR CKEKWENINK  300
YFKKVKESNK KRPEDSKTCP YFHQLDALYR NKAALSSSGA GGGGPAVHAS APSTQPQETV  360
TVTAAAPISQ TPPPPPPPTL PSQSSQHAAK NGGSSNAAGS GNGNGGGVSN RGASGGGSGG  420
TQAQASNGSV AASRFFGEGG AGAGGSASAA KKPEDIMKEM MEQRQPQPQA AVSGYNRIDG  480
ADSDNMDEDE DDYDDDDDDD DVDGNKMQFE IQFQRQHQPP PQHQHQNVVR PNSGAGASNP  540
PGTNAPSTAA AATTTAGSFL GMVQ*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025794483.1	0.0	trihelix transcription factor GTL1-like isoform X1
Refseq	XP_025794484.1	0.0	trihelix transcription factor GTL1-like isoform X1
TrEMBL	A0A2S3IKS4	0.0	A0A2S3IKS4_9POAL; Uncharacterized protein
STRING	GRMZM2G414159_P01	0.0	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	3e-53	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Pahal.I02802.4