PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I02660.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 358aa MW: 35643.7 Da PI: 8.2186

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I02660.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.4	1.8e-39	44	104	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+ l+cprCds+ntkfCyynnyslsqPr+fCk+CrryWtkGGalrnvPvGgg+rknk+s+ Pahal.I02660.1 44 PEQGLRCPRCDSSNTKFCYYNNYSLSQPRHFCKTCRRYWTKGGALRNVPVGGGCRKNKRSR 104 67899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.1E-33	46	102	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.73	48	102	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	8.0E-26	48	101	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	50	86	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010052	Biological Process	guard cell differentiation
GO:0010118	Biological Process	stomatal movement
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:1902066	Biological Process	regulation of cell wall pectin metabolic process
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MASSTAVAAG DDAVGTRKGG TGGGGGTAPP PATQQQQQPP PPPPEQGLRC PRCDSSNTKF 60 CYYNNYSLSQ PRHFCKTCRR YWTKGGALRN VPVGGGCRKN KRSRSAVAAA AAAAAASSRL 120 SLNLPVEGGV GDQQAAARLG FLGAGGAPVA SSPIGGAPAA DYQQAAGAVG MMALPRLHAA 180 QAVGQYVPFG EWPSGAGGDV SGGGGGHAMN DHAGAVSSSI ASSIESLSFI NQDLHWKLQQ 240 QRLATMFLGP PPPPTSAAAH VDGAPASAAH IGGAFLQMAG PPPGMESTMP AATSWFMDSS 300 YGVLPSPTAH ANNAAAATAI CNVAVSSGRS SGDDDSGTNC GSAIPSWGDM STFAMLP*

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MASSTAVAAG DDAVGTRKGG TGGGGGTAPP PATQQQQQPP PPPPEQGLRC PRCDSSNTKF  60
CYYNNYSLSQ PRHFCKTCRR YWTKGGALRN VPVGGGCRKN KRSRSAVAAA AAAAAASSRL  120
SLNLPVEGGV GDQQAAARLG FLGAGGAPVA SSPIGGAPAA DYQQAAGAVG MMALPRLHAA  180
QAVGQYVPFG EWPSGAGGDV SGGGGGHAMN DHAGAVSSSI ASSIESLSFI NQDLHWKLQQ  240
QRLATMFLGP PPPPTSAAAH VDGAPASAAH IGGAFLQMAG PPPGMESTMP AATSWFMDSS  300
YGVLPSPTAH ANNAAAATAI CNVAVSSGRS SGDDDSGTNC GSAIPSWGDM STFAMLP*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582402	1e-134	KC582402.1 Sorghum bicolor dof5 protein (dof5) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796800.1	0.0	dof zinc finger protein DOF5.7-like
TrEMBL	A0A2S3IKF7	0.0	A0A2S3IKF7_9POAL; Uncharacterized protein
STRING	Pavir.J13587.1.p	1e-151	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	6e-33	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	Pahal.I02660.1