PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02535.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 441aa    MW: 49285.9 Da    PI: 9.6095
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02535.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.53.7e-16160254498
                     E-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   4 vltpsdvlks.grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     ++++s++ ++   +v++k +a+e+  +k  ++t+tle +   ++W  +l +r ++g+y+l + Wk+Fv++n+Lke+D+++F+ ++ ++f+  v++
  Pahal.I02535.1 160 QMKKSSAKRQnPVVVISKGYAAEYFPQK--TQTITLERPGCkKKWYPRLHVRPNRGGYILCGPWKNFVRDNKLKENDICIFQPIKGQRFRVIVHL 252
                     555566665514469*********8665..458*****76559******99*******************************9988999999988 PP

                     E- CS
              B3  97 fr 98 
                     + 
  Pahal.I02535.1 253 LG 254
                     75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.0E-20149250IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-21151253IPR015300DNA-binding pseudobarrel domain
CDDcd100171.34E-17155251No hitNo description
SMARTSM010191.3E-9157256IPR003340B3 DNA binding domain
PROSITE profilePS5086310.884158256IPR003340B3 DNA binding domain
PfamPF023626.4E-15160253IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-11334437IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.37E-9336437IPR015300DNA-binding pseudobarrel domain
CDDcd100171.14E-8340435No hitNo description
PROSITE profilePS508637.472342437IPR003340B3 DNA binding domain
SMARTSM010190.033342437IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MYMAGRGCPR NKSCHCYKRC VDHTDGTMKC LLSHANSNRK HGTTIIQIFG SCCCNKDPSC  60
APTKNGIMVQ EGAANSIDTS RGSSDHATQS STNGTPESLS SSKESEDRPS ESQSSQLGHS  120
KTFSKLWMIS NKGDLTPEQE GKIDDFVEKM QPQFPVLVVQ MKKSSAKRQN PVVVISKGYA  180
AEYFPQKTQT ITLERPGCKK KWYPRLHVRP NRGGYILCGP WKNFVRDNKL KENDICIFQP  240
IKGQRFRVIV HLLGKASTHS RGRRPRDSNN GSARKQSSAA HVHDNSSSRD KFPQLNHCAS  300
DDSEEPSHPP PFIVLRHTSL TPAQEKTVDE KVKAIQSDVP IFLANMSEEI VGDSGTFSLD  360
FASRYATPHL PDGKQTLTLS QDGWRKAWHI KMLNRRMLPG ELREFAGDNR LRTGDLCLFE  420
PVKKEMLAMA VHIIRSEQYA *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797721.10.0B3 domain-containing protein Os03g0619800-like
TrEMBLA0A2S3IKN30.0A0A2S3IKN3_9POAL; Uncharacterized protein
STRINGPavir.Ia01275.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2959434