PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.I02533.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 249aa MW: 28354.2 Da PI: 8.5531 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.5 | 7.8e-16 | 8 | 97 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ffkv+ + ++r+++p kfa+++ k ++ +++l+ +g + +v + +++++ vl++GW+ F + ++++ D +vF+++g+ f++ v vf Pahal.I02533.7 8 FFKVM---MGDFRSRMTIPDKFAQRFRDKIRG--KIKLKVYNGSTCTVVV--ARHRNKLVLEAGWEAFISTHDIRLADLLVFRYNGN--FQFEVLVF 95 67777...5556678********999766444..79999999********..*******************************9885..55588888 PP -S CS B3 98 rk 99 + Pahal.I02533.7 96 DP 97 75 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.67E-22 | 2 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.8E-21 | 3 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.011 | 5 | 98 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.92E-18 | 6 | 96 | No hit | No description |
SMART | SM01019 | 7.0E-8 | 8 | 98 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-12 | 8 | 96 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 249 aa Download sequence Send to blast |
MDDRCKYFFK VMMGDFRSRM TIPDKFAQRF RDKIRGKIKL KVYNGSTCTV VVARHRNKLV 60 LEAGWEAFIS THDIRLADLL VFRYNGNFQF EVLVFDPSCC VKESSNVAQN CCDHVQVQQR 120 HRDLLDISSD SGDDQEPMQS SGSEDPTPAE KKGPNQSTKK TNTSSLTCHL NAPEFADVYS 180 SENDQEISSM TSYIFSPFTH LTQKQRMKVE KRVQDICSSI PIFGSVMTKC NITRNPRYLK 240 ICQSVSSK* |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796316.1 | 0.0 | putative B3 domain-containing protein Os03g0621600 isoform X1 | ||||
Refseq | XP_025796317.1 | 0.0 | putative B3 domain-containing protein Os03g0621600 isoform X1 | ||||
Refseq | XP_025796318.1 | 0.0 | putative B3 domain-containing protein Os03g0621600 isoform X1 | ||||
TrEMBL | A0A2S3IK40 | 0.0 | A0A2S3IK40_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia01271.1.p | 1e-144 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18990.1 | 7e-15 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.I02533.7 |