PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I02520.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 332aa MW: 36564.4 Da PI: 7.2354

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I02520.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180	5.9e-56	5	130	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelv++yL++kv++ + + ++i++vd++k+ePwdLp k++ +ekewyfFs rd+ky+tg r+nrat+sgyWk+tgkdke+++ Pahal.I02520.1 5 LPPGFRFHPTDEELVTYYLTRKVSDFAFAT-RAIADVDLNKCEPWDLPGKASMGEKEWYFFSMRDRKYPTGIRTNRATDSGYWKTTGKDKEIFH- 97 79***********************999.89***********988999************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 g lvg+kktLvfy+grapkgekt+Wvmheyrl Pahal.I02520.1 98 CGMLVGMKKTLVFYRGRAPKGEKTSWVMHEYRL 130 99***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-64	3	151	IPR003441	NAC domain
PROSITE profile	PS51005	60.377	5	151	IPR003441	NAC domain
Pfam	PF02365	2.7E-29	6	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MEEGLPPGFR FHPTDEELVT YYLTRKVSDF AFATRAIADV DLNKCEPWDL PGKASMGEKE 60 WYFFSMRDRK YPTGIRTNRA TDSGYWKTTG KDKEIFHCGM LVGMKKTLVF YRGRAPKGEK 120 TSWVMHEYRL QNKFPYKPNK EEWVVCRVFK KCQIIKMRPP QGSPTMDDSP CHDGNASLGE 180 LGELDVSSIL GSFTPAAAHA SSTSSPGALH QGAGESFGHR MDINAYMSWM AAANQGAAAA 240 AAAAMLPWAT TPGLFGNVFA PNHQLVQKPL PFAGCSQPRD FGGVAANVGS EHAMFASSLA 300 KVEMECDQQQ QQPAPAPEQQ LGMDESTWRA F*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-56	5	151	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-56	5	151	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-56	5	151	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-56	5	151	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-56	5	151	20	168	NAC domain-containing protein 19
3swm_B	2e-56	5	151	20	168	NAC domain-containing protein 19
3swm_C	2e-56	5	151	20	168	NAC domain-containing protein 19
3swm_D	2e-56	5	151	20	168	NAC domain-containing protein 19
3swp_A	2e-56	5	151	20	168	NAC domain-containing protein 19
3swp_B	2e-56	5	151	20	168	NAC domain-containing protein 19
3swp_C	2e-56	5	151	20	168	NAC domain-containing protein 19
3swp_D	2e-56	5	151	20	168	NAC domain-containing protein 19
4dul_A	1e-56	5	151	17	165	NAC domain-containing protein 19
4dul_B	1e-56	5	151	17	165	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00364	DAP	Transfer from AT3G18400	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK363171	0.0	AK363171.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013D22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795943.1	0.0	protein CUP-SHAPED COTYLEDON 1-like
TrEMBL	A0A2S3IK22	0.0	A0A2S3IK22_9POAL; Uncharacterized protein
STRING	Pavir.Ia01262.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7919	34	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	1e-92	NAC domain containing protein 58

Link Out ? help Back to Top
Phytozome	Pahal.I02520.1