PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02469.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 510aa    MW: 53352 Da    PI: 6.3764
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02469.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.77.6e-17307353455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  Pahal.I02469.1 307 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 353
                     6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.33E-21301364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.457303352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.26E-17306357No hitNo description
PfamPF000103.7E-14307353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-21307361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-19309358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MNQFVPDWNN MGDTSRPLGE DDDLIELLWC NGHVVMQSQN NRKLPPRPEK AAGAAAPAPA  60
SVAQDDEAGL WFPFALADSL DKDIFSEFFC EAPAAAAPVP ATPGVEDGKP CRDVPMEDDD  120
RHGGACAVSE APCDLMPPPK SAPVSGSRQQ TMSLADGGDN AGDLSDLFRA GSVGKAAEAG  180
ASSMLSAIGS SICGSNQVLV QRAVSAPGRA SGSALPSATG SANANASGRG NEATVASSSG  240
RSNYCFGTTT ATTEPTSTSN RSSKRKRLDT EDSESPSEDA ESESAAMLAR KPPQKLTTAR  300
RSRAAEVHNL SERRRRDRIN EKMRALQELI PHCNKTDKAS MLDEAIEYLK SLQVQVQMMW  360
MGSGIAASPV MFPGVHQYLP RMGVGMGAAA MPSMPRMPFM APQPVVHNAP VNPVPLSRAG  420
YRGHMPAVGI TEPYAHYLGV NHLQPTPSQH FAQGVGYYPL GAKAAVQQSP ALHHVPGGGM  480
PAAAAAPGVL PPESTPSRGP GMMPTTLLS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1311316ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9566451e-178EU956645.1 Zea mays clone 1569257 PIL5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794697.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
TrEMBLA0A2T8I1D40.0A0A2T8I1D4_9POAL; Uncharacterized protein
STRINGSi035110m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.15e-34phytochrome interacting factor 3-like 5