PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.I02466.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 435aa MW: 45758.2 Da PI: 6.3221 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56 | 9.2e-18 | 111 | 157 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEde l+ v+ +G + W++I+r++ gR +kqc++rw ++l Pahal.I02466.1 111 RGPWTEEEDETLKAMVEVYGERKWAAISRHLH-GRIGKQCRERWTNHL 157 89******************************.************996 PP | |||||||
2 | Myb_DNA-binding | 51.1 | 3.2e-16 | 165 | 207 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ WT+ +d l++a+k +G++ W+ Iartm gR+++++k++w+ Pahal.I02466.1 165 KNTWTEKDDMDLIEAHKVHGNR-WSMIARTME-GRSENSVKNHWN 207 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.386 | 106 | 161 | IPR017930 | Myb domain |
SMART | SM00717 | 5.5E-17 | 110 | 159 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.92E-29 | 110 | 206 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.4E-16 | 111 | 157 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-22 | 111 | 164 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.01E-15 | 113 | 157 | No hit | No description |
PROSITE profile | PS51294 | 16.845 | 162 | 214 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-12 | 164 | 212 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-12 | 165 | 207 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-14 | 165 | 211 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.19E-10 | 167 | 210 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 435 aa Download sequence Send to blast |
MDGGSSVRFG HGVAAGPVHL GGGGGGAHQV MPAGAGMIPA GMGSFLLGAS GMLAPGGNMV 60 QPGGYLAPAG YSTVPNALHA AWNGVAAAGG GQQQPPASAG SGLLTRLPPL RGPWTEEEDE 120 TLKAMVEVYG ERKWAAISRH LHGRIGKQCR ERWTNHLRPE IDKAKNTWTE KDDMDLIEAH 180 KVHGNRWSMI ARTMEGRSEN SVKNHWNATK RSLKAKRRLK KKKNAEAPPG QQWSVLEEYI 240 RSLRPDDLAA APPAPPSDDS PPSSYNVGYD GEVVSPPAAP GGGFDPAALG LYLSAAGGNN 300 SSAVNLAAMN PNMAAPPYLG LDLNAYYYGA PLQQAPPQMM MMGQGQQATA DNLITYPFVD 360 HLAWHSPVPN ADAYAASNAN AAAGQHYYYY SDAGAAAAAS ANPEDDVDVV QMASREFQLN 420 PSEEEVTLNL AGFM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-38 | 110 | 209 | 6 | 103 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025791584.1 | 0.0 | transcription factor CSA-like | ||||
TrEMBL | A0A2S3IJY2 | 0.0 | A0A2S3IJY2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J13941.1.p | 1e-159 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1882 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11050.1 | 1e-34 | myb domain protein 64 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.I02466.1 |