PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.I02411.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | NF-YA | ||||||||
Protein Properties | Length: 349aa MW: 37059.5 Da PI: 9.4809 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 98.2 | 8.4e-31 | 165 | 221 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d+p+YVN+KQy++Il+RR +Rak+e+e++l +k+rkpylheSRh hA+rR+RgsgGrF Pahal.I02411.4 165 DSPIYVNPKQYEGILRRRRARAKAERENRL-AKGRKPYLHESRHLHAMRRARGSGGRF 221 68****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.3E-34 | 163 | 224 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.285 | 164 | 224 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.6E-22 | 167 | 189 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 9.1E-28 | 167 | 221 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.6E-22 | 198 | 221 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 349 aa Download sequence Send to blast |
MMSFKGHEGF GQVAAGGQAS HGAAGAPLPW WAGPQLLYGE PAPLSPEETR RDSQFQVVPG 60 AQGGTPDPAP PAATKRGSPE VLKFSVFQGN LESGGKGEKT PEHSTTIALQ SPFPEYNGRF 120 EIGLGQSMAP SNYSCDDQCY GMLTTYGMRS MSSGRMLLPL NAPADSPIYV NPKQYEGILR 180 RRRARAKAER ENRLAKGRKP YLHESRHLHA MRRARGSGGR FLNTKKEGGA NANGAGKMAA 240 AAPPARLAMS PGSEPPRVPG LGNDGSNPRC HSRSSISSLS GSEVSSIYDH HDDQASRHHQ 300 YGGMEPHLRV PSFFTPLPAI MDGDHGGAAA ISSFKWAASD GCCELLKA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 1e-17 | 165 | 223 | 2 | 61 | HAPB protein |
4g92_A | 1e-17 | 165 | 223 | 2 | 61 | HAPB protein |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU965152 | 0.0 | EU965152.1 Zea mays clone 284127 nuclear transcription factor Y subunit A-10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796559.1 | 0.0 | nuclear transcription factor Y subunit A-10-like | ||||
Refseq | XP_025796560.1 | 0.0 | nuclear transcription factor Y subunit A-10-like | ||||
Refseq | XP_025796561.1 | 0.0 | nuclear transcription factor Y subunit A-10-like | ||||
TrEMBL | A0A2S3IJS0 | 0.0 | A0A2S3IJS0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib04124.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06510.3 | 5e-22 | nuclear factor Y, subunit A10 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.I02411.4 |