PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02411.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YA
Protein Properties Length: 326aa    MW: 34482.7 Da    PI: 10.0053
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02411.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA98.47.6e-31142198158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     d+p+YVN+KQy++Il+RR +Rak+e+e++l +k+rkpylheSRh hA+rR+RgsgGrF
  Pahal.I02411.3 142 DSPIYVNPKQYEGILRRRRARAKAERENRL-AKGRKPYLHESRHLHAMRRARGSGGRF 198
                     68****************************.**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.3E-34140201IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.285141201IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.2E-28144198IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.5E-22144166IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.5E-22175198IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MMSFKGHEGF GQVAAGGQAS HGAAGAPLPW WAGPQLLYGE PAPLSPEETR RDSQFQVVPG  60
AQGGTPDPAP PAATKRGSPE VLKFSVFQGN LESGGKGEKT PEHSTTIALQ SPFPEYNGRF  120
EIGLGQSMSS GRMLLPLNAP ADSPIYVNPK QYEGILRRRR ARAKAERENR LAKGRKPYLH  180
ESRHLHAMRR ARGSGGRFLN TKKEGGANAN GAGKMAAAAP PARLAMSPGS EPPRVPGLGN  240
DGSNPRCHSR SSISSLSGSE VSSIYDHHDD QASRHHQYGG MEPHLRVPSF FTPLPAIMDG  300
DHGGAAAISS FKWAASDGCC ELLKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A1e-17142200261HAPB protein
4g92_A1e-17142200261HAPB protein
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796559.10.0nuclear transcription factor Y subunit A-10-like
RefseqXP_025796560.10.0nuclear transcription factor Y subunit A-10-like
RefseqXP_025796561.10.0nuclear transcription factor Y subunit A-10-like
TrEMBLA0A2S3IJT20.0A0A2S3IJT2_9POAL; Uncharacterized protein
STRINGPavir.Ib04124.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.13e-19nuclear factor Y, subunit A6