PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.I02411.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NF-YA | ||||||||
Protein Properties | Length: 326aa MW: 34482.7 Da PI: 10.0053 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 98.4 | 7.6e-31 | 142 | 198 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d+p+YVN+KQy++Il+RR +Rak+e+e++l +k+rkpylheSRh hA+rR+RgsgGrF Pahal.I02411.3 142 DSPIYVNPKQYEGILRRRRARAKAERENRL-AKGRKPYLHESRHLHAMRRARGSGGRF 198 68****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.3E-34 | 140 | 201 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.285 | 141 | 201 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 8.2E-28 | 144 | 198 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.5E-22 | 144 | 166 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.5E-22 | 175 | 198 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MMSFKGHEGF GQVAAGGQAS HGAAGAPLPW WAGPQLLYGE PAPLSPEETR RDSQFQVVPG 60 AQGGTPDPAP PAATKRGSPE VLKFSVFQGN LESGGKGEKT PEHSTTIALQ SPFPEYNGRF 120 EIGLGQSMSS GRMLLPLNAP ADSPIYVNPK QYEGILRRRR ARAKAERENR LAKGRKPYLH 180 ESRHLHAMRR ARGSGGRFLN TKKEGGANAN GAGKMAAAAP PARLAMSPGS EPPRVPGLGN 240 DGSNPRCHSR SSISSLSGSE VSSIYDHHDD QASRHHQYGG MEPHLRVPSF FTPLPAIMDG 300 DHGGAAAISS FKWAASDGCC ELLKA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 1e-17 | 142 | 200 | 2 | 61 | HAPB protein |
4g92_A | 1e-17 | 142 | 200 | 2 | 61 | HAPB protein |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796559.1 | 0.0 | nuclear transcription factor Y subunit A-10-like | ||||
Refseq | XP_025796560.1 | 0.0 | nuclear transcription factor Y subunit A-10-like | ||||
Refseq | XP_025796561.1 | 0.0 | nuclear transcription factor Y subunit A-10-like | ||||
TrEMBL | A0A2S3IJT2 | 0.0 | A0A2S3IJT2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib04124.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14020.1 | 3e-19 | nuclear factor Y, subunit A6 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.I02411.3 |