PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I02348.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

LBD

Protein Properties

Length: 200aa MW: 20656.3 Da PI: 7.8241

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I02348.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	141.2	3.2e-44	29	128	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++Cv+apyfp +p+kfanvhk+FGasnv+kll+++p ++r da+sslvyeA+ar+rdPvyG+vg i++lqqq+e l+a+la Pahal.I02348.1 29 PCAACKLLRRRCAASCVFAPYFPPGEPHKFANVHKVFGASNVSKLLQEIPAQHRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQVEALQAQLA 123 7********************************************************************************************** PP DUF260 96 llkee 100 l+++e Pahal.I02348.1 124 LAQAE 128 99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.879	28	129	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-43	29	126	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MRDEVAVATP GGGRAGGGGG GGAASAPAPC AACKLLRRRC AASCVFAPYF PPGEPHKFAN 60 VHKVFGASNV SKLLQEIPAQ HRGDAVSSLV YEANARVRDP VYGCVGAISS LQQQVEALQA 120 QLALAQAEVV RLKMSNDYIV HRLKAARGGG GGGSSYAGSP SSMSSPKTAE PEAHCKATPE 180 LLDMVVDQPD MDDAQFWSY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-49	28	131	10	113	LOB family transfactor Ramosa2.1
5ly0_B	3e-49	28	131	10	113	LOB family transfactor Ramosa2.1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	11	19	GGRAGGGGG

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT069911	0.0	BT069911.1 Zea mays full-length cDNA clone ZM_BFb0321D10 mRNA, complete cds.
GenBank	KJ727650	0.0	KJ727650.1 Zea mays clone pUT5577 LOB transcription factor (LOB19) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025791513.1	1e-144	LOB domain-containing protein 4-like isoform X2
Swissprot	Q8LBW3	3e-56	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A2S3IJK7	1e-143	A0A2S3IJK7_9POAL; Uncharacterized protein
STRING	Pavir.Ib04170.1.p	3e-95	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	2e-36	LOB domain-containing protein 4

Link Out ? help Back to Top
Phytozome	Pahal.I02348.1

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]