PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I02345.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 490aa MW: 56986.1 Da PI: 6.2974

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I02345.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.6	1.1e-19	77	168	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY eYA+++ Fsvr+ ++k ng +++++f +eg+++e++k ++++ r++ e+r+gC a + vk++ +gk+ + l +eHnH+++ Pahal.I02345.1 77 KFYMEYAHSLAFSVRIGQQKLD-ANGVVIWKRFLYAREGYKTEKEKGasgSSSKDRRSRESRCGCPAYIYVKRTPEGKYIIVALYEEHNHAFT 168 6**************98876.9999************99998888888899999****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.2E-17	77	168	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.6E-11	288	335	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence Send to blast
MELNDRRGQE VVVEPTNIQE VDHIDVPLSM PHNMISVEEV DALGLVNADF NSESSPVREE 60 NFLCEGMLFD DMEAAHKFYM EYAHSLAFSV RIGQQKLDAN GVVIWKRFLY AREGYKTEKE 120 KGASGSSSKD RRSRESRCGC PAYIYVKRTP EGKYIIVALY EEHNHAFTTP SKRHLLRSNC 180 SVNEKAKTTL FNYHKASIGT SQAFRLLQIG AGGFEYVGCT KKDLQNYCSD FRHKIKDADA 240 QMFIENLHTL NKLEHNFFFE YEVKDGRLFR VFWADTTSRK NYVHFGDVLS FDTTYSTNQY 300 DMKFTPFTGV NHHMRSILFG SAFLADEKIE SYYHFENNEW LVGRYEICKS WIPAYFREIW 360 LGGILRTTSR SESANSFFSR FIGRKLALVE FWIRFDTALK YQWQDELIDD NTSMHTNPKL 420 LTSWELERNG GAVFTHEVFR RFQNELLAAR EHSDVQTTTE MEDRTITESE GWLSSFVEPK 480 FDSCIHLFL*

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence Send to blast

MELNDRRGQE VVVEPTNIQE VDHIDVPLSM PHNMISVEEV DALGLVNADF NSESSPVREE  60
NFLCEGMLFD DMEAAHKFYM EYAHSLAFSV RIGQQKLDAN GVVIWKRFLY AREGYKTEKE  120
KGASGSSSKD RRSRESRCGC PAYIYVKRTP EGKYIIVALY EEHNHAFTTP SKRHLLRSNC  180
SVNEKAKTTL FNYHKASIGT SQAFRLLQIG AGGFEYVGCT KKDLQNYCSD FRHKIKDADA  240
QMFIENLHTL NKLEHNFFFE YEVKDGRLFR VFWADTTSRK NYVHFGDVLS FDTTYSTNQY  300
DMKFTPFTGV NHHMRSILFG SAFLADEKIE SYYHFENNEW LVGRYEICKS WIPAYFREIW  360
LGGILRTTSR SESANSFFSR FIGRKLALVE FWIRFDTALK YQWQDELIDD NTSMHTNPKL  420
LTSWELERNG GAVFTHEVFR RFQNELLAAR EHSDVQTTTE MEDRTITESE GWLSSFVEPK  480
FDSCIHLFL*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804236.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2T7CMK6	0.0	A0A2T7CMK6_9POAL; Uncharacterized protein
STRING	Sb01g026910.1	1e-98	(Sorghum bicolor)
STRING	Sb07g004960.1	9e-99	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-43	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pahal.I02345.1