PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02285.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 308aa    MW: 33161.5 Da    PI: 6.4262
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02285.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.14.2e-15112158455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h ++Er+RR++iN++f eL +++P +     kK++Ka+iL  A++Y+k+Lq
  Pahal.I02285.1 112 DHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDATRYVKELQ 158
                     699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.082108157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-17112166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-12112158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-18112166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.80E-15113162No hitNo description
SMARTSM003535.5E-16114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEDMSLFIKC ATNTLQHEQP GLAAAGLDFS EATFPSLQAL REASHAAEMV QELINGVHAP  60
NSWSSAGGDG AASLNFAQPG SNPLRGLPDL GHGPPPTRRT GVGSMSASYA QDHIIAERKR  120
REKINQRFIE LSTVIPGLKK MDKATILSDA TRYVKELQEK LKDVEAGGSS GRSIETRLVR  180
AKRPCLHAAA ATEDDGSQRS ASPGTPTARK ELPEIEVRFS EKNVMVRVHC EKSKGVVVKV  240
LTEIEELQLT VIHANVMLFS ACTLIIAITA KVEEGFSATK EEIADRLDSA LLNQHSSCNS  300
TEETGTY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116121ERKRRE
2117122RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796507.10.0transcription factor bHLH25-like
RefseqXP_025796508.10.0transcription factor bHLH25-like
TrEMBLA0A2T8I1A90.0A0A2T8I1A9_9POAL; Uncharacterized protein
STRINGPavir.Ib04190.1.p1e-176(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-43bHLH family protein