PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02284.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 366aa    MW: 38781.5 Da    PI: 6.1179
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02284.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.61.5e-15168214455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h ++Er+RR++iN++f eL +++P++     kK++Ka+iL  A++Y+k+Lq
  Pahal.I02284.2 168 DHIIAERKRREKINQRFIELSTVIPSL-----KKMDKATILSDATKYVKELQ 214
                     699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.91164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-13168214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-18168223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-17168226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.06E-16169218No hitNo description
SMARTSM003531.3E-15170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.162282358IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MEEDSSLFMQ WAMDTLRHER PVAGAISNDC SEATFPSLQA LREASHAAEM VQELISAAPA  60
NSWSSGDDTT DGSSGGNNSA GAAMDHDAWP PTPNSARRAP SRSGSGTNLP VSWNFGAAAS  120
ALPGSDGMLA AAEAAPTRRP PDIVCRSPPT RRAGAKGAGS MSTPYAQDHI IAERKRREKI  180
NQRFIELSTV IPSLKKMDKA TILSDATKYV KELQEKLRGL EADGSSNGRS IVKTVVLVKR  240
PCLHAAAKPD EDGSPLSASS AAPAVRKQLP EIEARFSDKS VMVRINCEDG KGVAVKLLTE  300
VEELRLSITH ANVMPFPAGT LIITITAKVE EGFTVTAEEI VGRLNSALLH QHNSSCNSTD  360
DETGN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172177ERKRRE
2173178RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795850.10.0transcription factor NAI1-like isoform X2
TrEMBLA0A2S3IJF20.0A0A2S3IJF2_9POAL; Uncharacterized protein
TrEMBLA0A2S3IJF50.0A0A2S3IJF5_9POAL; Uncharacterized protein
STRINGPavir.Ia01004.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-40bHLH family protein