PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02245.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 361aa    MW: 39091.9 Da    PI: 7.5737
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02245.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.42.5e-082953272254
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     ++yp+  e+ +LA  +gL+ +q+++WF N R +
  Pahal.I02245.1 295 HPYPDDGEKLRLAVTTGLSRSQISNWFINARVR 327
                     89*****************************88 PP
2BELL55.91e-181562171071
            BELL  10 akLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                     akLl ll e++ r ++y  +l  v+ssFe + g g+a  Ytsl  +a++rhF +L+ ai  +
  Pahal.I02245.1 156 AKLLALLSELESRQERYFGELGRVASSFEPALGDGAASAYTSLMAQAMARHFGNLRRAILRR 217
                     8**********************************************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.7E-1290216IPR006563POX domain
PfamPF075261.2E-2395214IPR006563POX domain
Gene3DG3DSA:1.10.10.606.1E-25270343IPR009057Homeodomain-like
SMARTSM003891.9E-8271335IPR001356Homeobox domain
SuperFamilySSF466891.28E-16277339IPR009057Homeodomain-like
CDDcd000863.38E-9282332No hitNo description
PfamPF059204.7E-17288327IPR008422Homeobox KN domain
PROSITE profilePS5007111.078290331IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MVMAKQHEKG SPKRASNEPA PRSAVAGRPR PGPPAPFRLE QCCRCDDHRR QEDDGSSNGA  60
GPLLLTLGPL GPATDRRCSC VVAPAPAPTP ATMSVLRGSR YLRPAQELLG EVVRMADLAA  120
GAGDEEAAAD KQERLEAGGH RAVRRAAKND GDGIQAKLLA LLSELESRQE RYFGELGRVA  180
SSFEPALGDG AASAYTSLMA QAMARHFGNL RRAILRRLRL HAAAAAKRSP RAGEEGEHGD  240
GEEEEEVTEE MVDRVARRTK LAAVARAEQA WRPIRGLPEG SVAVLRAWLF DHFLHPYPDD  300
GEKLRLAVTT GLSRSQISNW FINARVRLWK PMIEEMYKDE FSEGSAVSRD DDTSGASSSS  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A8e-16277335563Homeobox protein Meis2
4xrm_B8e-16277335563Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792968.10.0BEL1-like homeodomain protein 11
SwissprotQ1PFD11e-54BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A2S3IJB40.0A0A2S3IJB4_9POAL; Uncharacterized protein
STRINGPavir.Ia00979.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.14e-47BEL1-like homeodomain 11