PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.I02227.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 316aa MW: 33902.7 Da PI: 4.8762 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 52.2 | 8.2e-17 | 238 | 274 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCgt++ Tp +Rrgp g++tLCnaCGl+++ kg+ Pahal.I02227.2 238 CQNCGTSEkmTPAMRRGPAGPRTLCNACGLMWANKGT 274 **********************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 14.818 | 97 | 132 | IPR010399 | Tify domain |
SMART | SM00979 | 7.0E-10 | 97 | 132 | IPR010399 | Tify domain |
Pfam | PF06200 | 2.2E-12 | 100 | 131 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 13.404 | 166 | 208 | IPR010402 | CCT domain |
Pfam | PF06203 | 6.8E-15 | 166 | 206 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 8.708 | 232 | 291 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 8.0E-11 | 232 | 285 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 5.7E-11 | 236 | 282 | No hit | No description |
CDD | cd00202 | 7.58E-16 | 237 | 292 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 7.2E-14 | 237 | 276 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 2.2E-14 | 238 | 274 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 238 | 265 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 316 aa Download sequence Send to blast |
LHELGPQLHH YSSRPASRPS IPQSRVASSP PPPAMPDADV DVEMRAAAAA PGGDDGEDDT 60 GEEEDDDGDD VYDEDEEERT APAPAEEPPA PAPVSALPGN PNQLTLLFQG EVYVFESVTP 120 DKVQAVLLLL GRGELPPDYA GKVVPSQNEN KGYDDILRRT DIPAKRVASL LRFREKRKER 180 NFDKKIRYAV RKEVALRMQR RKGQFAGRAS LEGESPAPGC DPGSQSSGLD FVSRESKCQN 240 CGTSEKMTPA MRRGPAGPRT LCNACGLMWA NKGTLRSCPK AKVESSVVAT EQAGNDNKAL 300 VTPKNDNVSA SNGEA* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU964966 | 0.0 | EU964966.1 Zea mays clone 282829 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025793442.1 | 0.0 | GATA transcription factor 18-like isoform X1 | ||||
Swissprot | Q10F25 | 1e-136 | GAT18_ORYSJ; GATA transcription factor 18 | ||||
TrEMBL | A0A2T8I136 | 0.0 | A0A2T8I136_9POAL; Uncharacterized protein | ||||
STRING | Sb01g011840.1 | 1e-152 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G21175.2 | 3e-66 | ZIM-like 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.I02227.2 |
Publications ? help Back to Top | |||
---|---|---|---|
|