PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02227.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 328aa    MW: 35012.9 Da    PI: 4.8876
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02227.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.18.6e-17238274135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+nCgt++  Tp +Rrgp g++tLCnaCGl+++ kg+
  Pahal.I02227.1 238 CQNCGTSEkmTPAMRRGPAGPRTLCNACGLMWANKGT 274
                     **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009797.0E-1097132IPR010399Tify domain
PROSITE profilePS5132014.81897132IPR010399Tify domain
PfamPF062002.3E-12100131IPR010399Tify domain
PfamPF062037.1E-15166206IPR010402CCT domain
PROSITE profilePS5101713.404166208IPR010402CCT domain
PROSITE profilePS501148.708232291IPR000679Zinc finger, GATA-type
SMARTSM004018.0E-11232285IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-11236282No hitNo description
CDDcd002026.46E-16237292No hitNo description
Gene3DG3DSA:3.30.50.107.6E-14237276IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.3E-14238274IPR000679Zinc finger, GATA-type
PROSITE patternPS003440238265IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
LHELGPQLHH YSSRPASRPS IPQSRVASSP PPPAMPDADV DVEMRAAAAA PGGDDGEDDT  60
GEEEDDDGDD VYDEDEEERT APAPAEEPPA PAPVSALPGN PNQLTLLFQG EVYVFESVTP  120
DKVQAVLLLL GRGELPPDYA GKVVPSQNEN KGYDDILRRT DIPAKRVASL LRFREKRKER  180
NFDKKIRYAV RKEVALRMQR RKGQFAGRAS LEGESPAPGC DPGSQSSGLD FVSRESKCQN  240
CGTSEKMTPA MRRGPAGPRT LCNACGLMWA NKGTLRSCPK AKVESSVVAT EQAGNDNKAL  300
VTPKNDNVSA SNGEATSAAE TGVPKAP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9649660.0EU964966.1 Zea mays clone 282829 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793442.10.0GATA transcription factor 18-like isoform X1
SwissprotQ10F251e-137GAT18_ORYSJ; GATA transcription factor 18
TrEMBLA0A2T8I1360.0A0A2T8I136_9POAL; Uncharacterized protein
STRINGSb01g011840.11e-159(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-66ZIM-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]