PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02197.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 1493aa    MW: 161838 Da    PI: 4.0634
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02197.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH314.4e-1010381060527
                      --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH    5 lCrffartGtCkyGdrCkFaHgp 27  
                      +Crf++ +G C+yG++C+F+H++
  Pahal.I02197.2 1038 NCRFYMSNGSCSYGSSCHFNHPQ 1060
                      7********************97 PP
2zf-CCCH22.42.2e-0711971222227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHgp 27  
                       +++C+f +r+G Ck+ + C++ H++
  Pahal.I02197.2 1197 ERPECPFLQRFGNCKFASACQYYHPE 1222
                      689*********************96 PP
3zf-CCCH39.41e-1212681294127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHgp 27  
                      +++++C+f+++tG Ck+G+ CkF+H++
  Pahal.I02197.2 1268 PGEPECPFYMKTGSCKFGADCKFHHPK 1294
                      5799*********************96 PP
4zf-CCCH23.69.2e-0813611387127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHgp 27  
                      ++++ Cr+++++GtCk+ + C F+H++
  Pahal.I02197.2 1361 PGQPDCRYYMQFGTCKFQSACMFNHPK 1387
                      5789*********************96 PP
5zf-CCCH34.63.1e-1113981420527
                      --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH    5 lCrffartGtCkyGdrCkFaHgp 27  
                       C+f+++tGtC++G+ C F+H++
  Pahal.I02197.2 1398 QCPFYMKTGTCQFGSACEFSHPK 1420
                      6********************96 PP
6zf-CCCH23.59.7e-0814601485126
                      --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHg 26  
                      +++++C+++++ G+Ck+  +CkF+H+
  Pahal.I02197.2 1460 PGEPECSHYMKHGYCKFQKSCKFHHP 1485
                      5799*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.7E-410331060IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.95710331061IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-510371060IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-810381060IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-510391059IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.44111951223IPR000571Zinc finger, CCCH-type
SMARTSM003560.0511961222IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.93912671295IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-712671294IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-1012691294IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-512721295IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-412731294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.55813601388IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-413601387IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-513621387IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-413931420IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.47413931421IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-513951422IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-913971420IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-413981420IPR000571Zinc finger, CCCH-type
SMARTSM003560.003714591486IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3114591487IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-514611485IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1493 aa     Download sequence    Send to blast
MAGAGDEDEF KDALAAADSP PSSPSLASKP KPAAAAGGGG GLGRRLLSSI PIPASLSAAI  60
GRFSGPKPPP ANVGLGLLLH GDLATPADGY GTPASDAATA ISSPHLPPLA SLQRQHGEDQ  120
VAMLGAGVGE EGLGLVPAEE QGRPTAEDRE QEGVAVDGCS ANRNDFSLRG QEEEGEQCHG  180
DELGVAVDGC MVQDQEELVE QEGAPKDCAA VVEDQSNSTA VEQCASDETR AVKDDNAVEV  240
KEQVTDQEGA VSILFAAEDG IAVGSQEEDD VLVAKHGEDV ISVQDQLEVV EQCTGDQLRT  300
TTDDSAGQDQ DLLEQEEATE YYTVLGAVEQ CNNDGSKEVK DVNIMEEEER AVEQEGALGI  360
LDAAKDLCVL DTAKNGAPVE PQEEDVVVKE QNEDVIFVQG QHKVVEQCTG DLLRTATDDN  420
AAQDQDVVEQ EGATEYYTAV EAVEQCTNDG SKAVKDGNVV EEKEKAVEQE VALGILDAAK  480
DCSTVESQEE DDVVVAEKSG DNISVQNEHK VVEQCTGDQL KATADDNATQ DQGVLEQEVA  540
TECYTALEAV EECANDESRA AKDGNVVEEK ERPLKQEGDV SVLNAAKDNI IVESQEEDVV  600
AAEQCEGDIS VQDQHKVVEQ CTSGLRTTMD DNSAEGQEVV EQEGAVVDRD STTYGIAVED  660
KEKEVKQSAC DESRATNDEN AVEANKKMMD QEDVIDKHGV IKDVSAVELL EENSVVVVEQ  720
GGDAITLPDE GNVVEQCTSD QLRATMDDNA AENQEIGEQG GAIVERVVIT DGISVEDQEK  780
EVEQSAGAES TATKDEDGVE DNEDVVVAEQ GGVEISVGDV GNVVKQCTSD QLRANMEDNA  840
AECQEEVVEQ EGAIFERGAT VSGTTVEDQD KEDEQSAGNE LRVTKDENTV EDAIDKQGAT  900
KDGSGVESQE EDVVLGEQGG DGISVRDEGN VVEQCSSDQQ RTTTDDNSAE DPEMVDQGVA  960
SILGADKVDI AVESREDIVV AEQVEDGVSV QNQDKAVEQC TSGQLRTSTD GFAAEDQEAS  1020
RENIGFSTRY PQRPGKLNCR FYMSNGSCSY GSSCHFNHPQ LKATLEVSNF PSEQRNREVE  1080
FLELNRVGLP IREGARKCTY YMRNGWDDTN LQSSPHSKKS AEHTTINDIS SGSEILPPNI  1140
LRMLLPPQNE PPCTEEKEMK VNKDPDWPSA SDDSDGCCSA DSSDGPLCKQ EHVDYPERPE  1200
CPFLQRFGNC KFASACQYYH PEDKFPSRYN PIDKFPSRYH PKDNFQSRYR SKRDPPLAEE  1260
LKVYPDRPGE PECPFYMKTG SCKFGADCKF HHPKDLTQSM QCPGSPKRSV AANEHNPAAR  1320
IPSIHGPASP ERSVAANEHH QAARITLQDH MHQQQKYPAR PGQPDCRYYM QFGTCKFQSA  1380
CMFNHPKDRL SSGWHPAQCP FYMKTGTCQF GSACEFSHPK DQCSSTGEAI GDGTDYEHDF  1440
VTKSENVLQQ QEKTIYPERP GEPECSHYMK HGYCKFQKSC KFHHPTYRLS RT*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793430.10.0uncharacterized protein LOC112874363 isoform X2
TrEMBLA0A2S3IJR70.0A0A2S3IJR7_9POAL; Uncharacterized protein
STRINGPavir.Ib04286.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.34e-35zinc finger nuclease 3