PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.I02147.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NF-YA | ||||||||
Protein Properties | Length: 270aa MW: 28387.5 Da PI: 9.5841 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 104.9 | 6.9e-33 | 172 | 228 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e ekk+ k+rkpylheSRh+hA+rR+Rg+gGrF Pahal.I02147.1 172 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-VKTRKPYLHESRHQHAMRRARGNGGRF 228 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.5E-36 | 170 | 231 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.651 | 171 | 231 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.4E-28 | 173 | 228 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 7.7E-25 | 174 | 196 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 176 | 196 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 7.7E-25 | 205 | 228 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MESRPGGTNL VEQRAQGAVL PSGGAAMQPW WTSSGAGLGA VSPAVVAPGS GAGISLSSSP 60 VGGGGGGGGA GAAKGAASDE SSEDSRRSGE PKDGSAGQEK NHATSQMPAL MSEYLTPYSQ 120 LELNQSIGSA AYQYPDPYYA GMIPPYGTQA VAHFQLPGLS HSRMPLPLEV SEEPVYVNAK 180 QYHGILRRRQ SRAKAELEKK VVKTRKPYLH ESRHQHAMRR ARGNGGRFLN TKKSDNGTPD 240 GNAEPKKGDQ NSEHLHVPPD LLQLRQNEA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-22 | 172 | 236 | 2 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795066.1 | 0.0 | nuclear transcription factor Y subunit A-9-like | ||||
TrEMBL | A0A2S3IJ32 | 0.0 | A0A2S3IJ32_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J08102.1.p | 1e-175 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8205 | 36 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.2 | 3e-42 | nuclear factor Y, subunit A7 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.I02147.1 |