PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.I02044.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | CO-like | ||||||||
Protein Properties | Length: 403aa MW: 43816.4 Da PI: 6.8453 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22 | 3.4e-07 | 17 | 60 | 3 | 39 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39 +r C+ + + +++++C ++ +lC+ C + H+ H+v Pahal.I02044.1 17 ARSCDGCMRRRARWHCPADDAFLCQACDASVHSAnplarrhHRV 60 678*****************************668888886655 PP | |||||||
2 | CCT | 67.2 | 4.4e-23 | 322 | 365 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++ Pahal.I02044.1 322 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRS 365 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.727 | 15 | 62 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.6E-8 | 15 | 62 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.2E-5 | 17 | 59 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.00E-11 | 18 | 62 | No hit | No description |
PROSITE profile | PS51017 | 15.993 | 322 | 364 | IPR010402 | CCT domain |
Pfam | PF06203 | 8.9E-18 | 322 | 364 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MTSAGSATGA ALGARTARSC DGCMRRRARW HCPADDAFLC QACDASVHSA NPLARRHHRV 60 RLPSASCSSP PRDPDSPAWL HGLKRRPRTP RSKPGGSGKH EATPASIAAA ASAAVPDLEA 120 EEESGSGIVG DNDFYGLEDD DDEDLLYRVP VFDPMLAELY NPVADEGEQK PACLISSLAE 180 TSPEFASGSA EADGLSGFDV PDMELASFAA DMESLLMGVE DGFDDLGFLN EEKPQVNVDL 240 GMNLEAVAAP APERDEKKRK RPEMILKLNY EGVIASWVRD GGSPWFHGER PHLDPYESWS 300 DFPAGCRGLL GGAVTAVTGG EREARVSRYR EKRRTRLFAK KIRYEVRKLN AEKRPRMKGR 360 FVKRSSLPPL PPPPPQKQPP RAMPHVGMML APPVGAHGRF RF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 82 | 88 | LKRRPRT |
2 | 332 | 348 | RRTRLFAKKIRYEVRKL |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727843 | 0.0 | KJ727843.1 Zea mays clone pUT5887 C2C2-CO-like transcription factor (COL8) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797667.1 | 0.0 | zinc finger protein CONSTANS-LIKE 16-like | ||||
TrEMBL | A0A2S3IIU8 | 0.0 | A0A2S3IIU8_9POAL; Uncharacterized protein | ||||
STRING | Si035937m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10004 | 22 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 6e-58 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Pahal.I02044.1 |