PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I01925.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 353aa    MW: 38230.4 Da    PI: 6.184
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I01925.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.4e-13173220355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + h ++Er+RR+++ ++f  L +++P +     kK++Ka++L  A++Y+k+Lq
  Pahal.I01925.1 173 QDHIMAERKRREKLSQRFIALSKIVPGL-----KKMDKASVLGDAIKYVKQLQ 220
                     6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.821170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-10173220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-18173238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-17174231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.59E-14175224No hitNo description
SMARTSM003534.0E-15176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MATQWFSNMV MDEPSFFHQW QSDGLLEQYT EQQIAVAFGQ GEVEVDQALA AALMPLQQPA  60
AAAEHRPRKA AKVNTSWDSC ITEQGSPADS SSPTILSFGG HAAAAAFAKA EAHQVPSAPY  120
YGAPAKAPKQ EVVDTGATAF HQERPAKRSY DAMVAEVAKV PAPATTRPAS QNQDHIMAER  180
KRREKLSQRF IALSKIVPGL KKMDKASVLG DAIKYVKQLQ DQVKGLEDEA RRRPVEAAVL  240
VKKSQLSADD DDGSSCDENF VGTEAAGTLP EIEARVSDRT VLIRIHCENR KGVLIAALSE  300
VERLGLTIMN TNVLPFTTST LDITVMAMAG DDFCLSVKDI VKKLNQAFKS SF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-13174229863Transcription factor MYC2
5gnj_B6e-13174229863Transcription factor MYC2
5gnj_E6e-13174229863Transcription factor MYC2
5gnj_F6e-13174229863Transcription factor MYC2
5gnj_G6e-13174229863Transcription factor MYC2
5gnj_I6e-13174229863Transcription factor MYC2
5gnj_M6e-13174229863Transcription factor MYC2
5gnj_N6e-13174229863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178183ERKRRE
2179184RKRREK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0365520.0BT036552.2 Zea mays full-length cDNA clone ZM_BFb0123D23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795190.10.0transcription factor bHLH18-like
TrEMBLA0A2S3III00.0A0A2S3III0_9POAL; Uncharacterized protein
STRINGSi036393m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-56bHLH family protein