PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I01766.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 368aa    MW: 40456.1 Da    PI: 4.86
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I01766.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1101.7e-34541442101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+++++++sw   g+sfvv+d + fa+ +Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +gk+ell++
  Pahal.I01766.1  54 FLTKTYDVVDDPNTDTVVSWGFAGHSFVVWDANAFANVILPRYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGKRELLKT 139
                     9****************************************************************999.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     ikr++
  Pahal.I01766.1 140 IKRRR 144
                     ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.2E-5650143IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.17E-3350143IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.7E-3750143IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-3054143IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.2E-195477IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.2E-1992104IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434093117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.2E-19105117IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MDPFHGIVKE EEFDFDFDFT GAPAAEASSS SWAVGVPELP RPMEGLGEVG PTPFLTKTYD  60
VVDDPNTDTV VSWGFAGHSF VVWDANAFAN VILPRYFKHS NFSSFVRQLN TYGFRKVDPD  120
RWEFANEGFL RGKRELLKTI KRRRPPSSPS AQQGQAQPPA ACLEVGQFGL EGEVQRLQRD  180
KGILLAEVVK LRQEQQATRA QMQAMEDRIT TAEQKQQQMT VFLARAMKNP SFLRMLVDRQ  240
GLAGRRRELE DALSKKRRRP IEYLPRDGES SSSAAAGAAV GDYISGLPVG VNGVARPDDD  300
EGRRDDSGGG GEDTESFWVE LLKLGLEEKH REGGGEDDGG AGVDNDVDVL VQSIYHLNPN  360
PGSPSGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-254514317129Heat shock factor protein 1
5d5v_B2e-254514317129Heat shock factor protein 1
5d5v_D2e-254514317129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136142LKTIKRR
2244258RRRELEDALSKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0858160.0BT085816.2 Zea mays full-length cDNA clone ZM_BFc0067H20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795376.10.0heat stress transcription factor A-2a-like
SwissprotQ84MN71e-157HFA2A_ORYSJ; Heat stress transcription factor A-2a
TrEMBLA0A2S3II900.0A0A2S3II90_9POAL; Uncharacterized protein
STRINGPavir.J00582.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-77heat shock transcription factor A6B
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  3. Mittal D,Madhyastha DA,Grover A
    Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually.
    Plant Sci., 2012. 197: p. 102-13
    [PMID:23116677]