PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.I01675.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 260aa MW: 27025.1 Da PI: 4.7441 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.8 | 1.3e-18 | 75 | 123 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f+t+e+Aa+a++ a+++++g Pahal.I01675.1 75 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFDTPEMAARAHDVAALAIKG 123 9****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.4E-13 | 73 | 123 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.222 | 74 | 131 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-21 | 74 | 131 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-32 | 74 | 132 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-37 | 74 | 137 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.77E-31 | 75 | 132 | No hit | No description |
PRINTS | PR00367 | 1.3E-10 | 75 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 97 | 113 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MSLLETASRA RCSSVMEEER ALSPVSDAST TCSSSGGGSG PGSPAASLAS LDDSGAASAA 60 SSRKRPRREL KHPAYRGVRM RAWGKWVSEI REPRKKSRIW LGTFDTPEMA ARAHDVAALA 120 IKGRAAHLNF PEMSHELPRA ASAAPEDVRA AAALAAAMES VAPAAPSDSS HGGAAGSDED 180 EEPAASASPV HDAGNAGGEE KAAPSIEHPV QADGLVLDLA LLDLPDVLLE FGFELALPPT 240 STPCCYDLSW DEPLLLWEH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-18 | 72 | 131 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU970180 | 1e-133 | EU970180.1 Zea mays clone 341615 dehydration-responsive element-binding protein 1B mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792130.1 | 0.0 | ethylene-responsive transcription factor ERF043-like | ||||
TrEMBL | A0A2S3GS72 | 0.0 | A0A2S3GS72_9POAL; Uncharacterized protein | ||||
STRING | GRMZM2G041839_P01 | 1e-114 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16750.1 | 8e-37 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.I01675.1 |