PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.I01602.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | G2-like | ||||||||
Protein Properties | Length: 332aa MW: 35970.2 Da PI: 10.7406 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 90.6 | 1.4e-28 | 220 | 271 | 1 | 52 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 k+r++W+peLH++Fv a++qLGG+++AtPk+i+e+m+v+gLt+++vkSHLQk Pahal.I01602.2 220 KARRCWSPELHRQFVAALHQLGGPQVATPKQIREVMQVDGLTNDEVKSHLQK 271 68*************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.176 | 217 | 277 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-24 | 218 | 271 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.96E-14 | 218 | 273 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-22 | 220 | 272 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-6 | 222 | 271 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MGLDVAEIGM GLDLGLDLRL FAARSAGGMA AAAAKGAPAG IEACIRSLEE ERRKIEVFRR 60 ELPLCVRLLA DVIEELKEEA ARKGSDLELR PDDGDKRKWM STAQLWVDSD AKSKSEKEQR 120 NAMTSPEPKL LGGPMPIRAV PAVPPPPPPC FRRDDNAAGT VGLPGLSLLP PAAKTSISPV 180 PAVDEHRQNA AARLSATMSP SGPGLNLHAQ TQQQQQQARK ARRCWSPELH RQFVAALHQL 240 GGPQVATPKQ IREVMQVDGL TNDEVKSHLQ KIARRGSGEP VDSAGGWPLG FSGAKQLTVR 300 VSSGPPSVLW VRGGRLCSHR RRRQQQQQRR R* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792667.1 | 1e-146 | transcription factor HHO5-like | ||||
TrEMBL | A0A2S3IIE9 | 0.0 | A0A2S3IIE9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia00346.1.p | 1e-144 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 1e-22 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.I01602.2 |