PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I01602.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 349aa    MW: 37117.9 Da    PI: 7.9933
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I01602.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.61e-31220275156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k+r++W+peLH++Fv a++qLGG+++AtPk+i+e+m+v+gLt+++vkSHLQkYRl+
  Pahal.I01602.1 220 KARRCWSPELHRQFVAALHQLGGPQVATPKQIREVMQVDGLTNDEVKSHLQKYRLH 275
                     68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.744217277IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-28218278IPR009057Homeodomain-like
SuperFamilySSF466891.25E-16218278IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-25220275IPR006447Myb domain, plants
PfamPF002491.2E-7222273IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGLDVAEIGM GLDLGLDLRL FAARSAGGMA AAAAKGAPAG IEACIRSLEE ERRKIEVFRR  60
ELPLCVRLLA DVIEELKEEA ARKGSDLELR PDDGDKRKWM STAQLWVDSD AKSKSEKEQR  120
NAMTSPEPKL LGGPMPIRAV PAVPPPPPPC FRRDDNAAGT VGLPGLSLLP PAAKTSISPV  180
PAVDEHRQNA AARLSATMSP SGPGLNLHAQ TQQQQQQARK ARRCWSPELH RQFVAALHQL  240
GGPQVATPKQ IREVMQVDGL TNDEVKSHLQ KYRLHNRRSP GVAPVSQSIL LVGGLWGSQE  300
QSSSLSGSPQ GPLQFSGSGA AVSAATVGGD SSSSSDEDDK SDEGYSRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A6e-14220273154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-14220273154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-14220273154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-14220273154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792667.10.0transcription factor HHO5-like
TrEMBLA0A2S3IHS60.0A0A2S3IHS6_9POAL; Uncharacterized protein
STRINGPavir.J18103.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181737107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25790.11e-26G2-like family protein