PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I01549.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 648aa    MW: 67695 Da    PI: 6.9959
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I01549.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.26.6e-16298357155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Pahal.I01549.1 298 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 357
                     78*******************988886678446*************************98 PP
2AP247.93.3e-15400451155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +s    +k  +lg+f t eeAa+a++ a+ k++g
  Pahal.I01549.1 400 SIYRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 451
                     57****************999754...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.52E-20298366No hitNo description
PfamPF008471.9E-12298357IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-16298366IPR016177DNA-binding domain
SMARTSM003801.1E-28299371IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-15299365IPR001471AP2/ERF domain
PROSITE profilePS5103219.137299365IPR001471AP2/ERF domain
PRINTSPR003673.8E-6300311IPR001471AP2/ERF domain
PfamPF008471.7E-10400451IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18400460IPR016177DNA-binding domain
CDDcd000181.08E-23400461No hitNo description
PROSITE profilePS5103219.137401459IPR001471AP2/ERF domain
SMARTSM003803.9E-34401465IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-18401459IPR001471AP2/ERF domain
PRINTSPR003673.8E-6441461IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MTSNSSQNLS SCSTGGSDAA VGGSWLGFSL SPHMAATMDG ADGSNAVQVQ QHHGCLFYPP  60
VVSSSPAGFC YALGGGQDGV ATAGANGGGG FYPGISSMPL KSDGSLCIME ALHRSEQEHH  120
GVVVSSASPK LEDFLGAGPA MALSLDNSSF YYAGGHGHGQ DQGAYLQPLH CAVIPGSGAH  180
GHDVYGGHAQ LVDEQSAAAM AASWFSARGG GGYDVNGAGA ILPAQGHPHP LALSMSSGTG  240
SQSSCVTMQV GAHPHAHADA VAEYIAMDGS KKRGGSGALQ KQPTVHRKSI DTFGQRTSQY  300
RGVTRHRWTG RYEAHLWDNS CKKEGQTRKG RQVYLGGYDM EEKAARAYDL AALKYWGTST  360
HINFPIEDYG EELEEMKNMT RQEYVAHLRR KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR  420
VSGNKDLYLG TFSTQEEAAE AYDVAAIKFR GLNAVTNFDI TRYDVDKIME SNTLLPGEQV  480
RRRKDGEGGG AAAEGDAVAS AAAALVQAGN CAAADTWRIQ AAPAVTRADG LHGQVQQQQQ  540
HQGLLSSEAF SLLHDIVSVD AAGQGGGSAS AHMSNASSLA PSVSNSREQS PDRGGGGLAM  600
LFTKPAEAAS KLACPLPLGS WVSPSPVSAR PAVSIAHLPM FAAWTDA*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3753180.0AK375318.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3090N20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796942.10.0AP2-like ethylene-responsive transcription factor CRL5
SwissprotQ84Z021e-171CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A2S3IHN30.0A0A2S3IHN3_9POAL; Uncharacterized protein
STRINGPavir.J24038.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-127AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]