PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I01546.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 320aa    MW: 35335.2 Da    PI: 8.3118
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I01546.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.5e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+ +++q G+g +W + ++++g++R++k+c++rw++yl
   Pahal.I01546.1 14 KGPWSPEEDAKLKSYIEQNGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding38.72.3e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd +++ +    G++ W+ Ia+ ++ gRt++++k++w++
   Pahal.I01546.1  69 GGFSEEEDRIILSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.706962IPR017930Myb domain
SuperFamilySSF466892.04E-2611109IPR009057Homeodomain-like
SMARTSM007176.5E-121364IPR001005SANT/Myb domain
PfamPF002494.9E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-241569IPR009057Homeodomain-like
CDDcd001673.76E-91662No hitNo description
PROSITE profilePS5129422.33263117IPR017930Myb domain
SMARTSM007175.6E-1267115IPR001005SANT/Myb domain
PfamPF002494.0E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2370117IPR009057Homeodomain-like
CDDcd001672.48E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGRAPCCDKA SVKKGPWSPE EDAKLKSYIE QNGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDRIIL SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLFGK  120
QSRKDQRQLQ QQQQQQLLRQ ATASDGMKQE AATGDVNGSS GLPAVTYNWH QQAIVGPVPG  180
MMMEGHRIGD EVDESIQKLL YKLGGASPFA TLQVPQCVPP MYEGSPSLMP PSCTVDTTSL  240
KEGGMQGSSA LPALELDQSF HFNQVKLDSL DCFFGMGTDQ SMRWTEMSPL VCPNNTVASS  300
SQGMQQYCHV DETVNLGMK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25141177108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1120181e-136AK112018.1 Oryza sativa Japonica Group cDNA clone:006-308-C02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796353.10.0transcription factor RAX2-like
TrEMBLA0A2S3IHN60.0A0A2S3IHN6_9POAL; Uncharacterized protein
STRINGPavir.J07059.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.17e-82myb domain protein 36