PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I01457.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TCP
Protein Properties Length: 393aa    MW: 39921.1 Da    PI: 9.8684
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I01457.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.95.1e-36701932126
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaesssssasnsssgkaak 92 
                      g+kdrhsk++T++g RdRRvRls+++a++f+dLqd+LGfd++sk+ieWL+++a  ai +l+ +++ +  +     ea++ +++++      + +
  Pahal.I01457.1  70 SGGKDRHSKVYTAKGIRDRRVRLSVPTAIQFYDLQDRLGFDQPSKAIEWLINAASDAIEKLPALDTAAFAAIpvpgEADATKVKQQ------HGS 158
                     689*************************************************************4444433354443333333333......334 PP

             TCP  93 saakskksqksaasalnlak.esrakarararert 126
                     s+  s++s++s+ s l+l++ + r  a a ar+r+
  Pahal.I01457.1 159 SSGGSSPSETSKGSELSLSRsDGRGGAAAAARDRE 193
                     44455566666666688888777766665555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-3471198IPR005333Transcription factor, TCP
PROSITE profilePS5136932.36772130IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MEAVGDGAAA GAGGGAPPGR SQQGAKRGRG GGVRGSEAEA AAAWGQPPAL PLPLPQGPGA  60
GSRIYRVRAS GGKDRHSKVY TAKGIRDRRV RLSVPTAIQF YDLQDRLGFD QPSKAIEWLI  120
NAASDAIEKL PALDTAAFAA IPVPGEADAT KVKQQHGSSS GGSSPSETSK GSELSLSRSD  180
GRGGAAAAAR DREVTVASTS AQAASFTELL TGVASAGAIS ASEHKQSWQQ QPNVSAAAAA  240
DCVGIAHPGK GAHGLSTHAF SGPIKFGNAP PFGMVPAQSF SFTTPVEMPH FSLGQDALAA  300
SSAPAAGDYS LNFSMSSGFL GANRGTLQSN SQSNFSGHHH QQLQRLDGPF LFGHAAAAAA  360
AHPASENQLT ASAALQLWDG FRHSGMKEKS KN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-2577131155Putative transcription factor PCF6
5zkt_B2e-2577131155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795716.10.0transcription factor PCF6-like
SwissprotA2XMN11e-112PCF6_ORYSI; Transcription factor PCF6
SwissprotQ10CE81e-112PCF6_ORYSJ; Transcription factor PCF6
TrEMBLA0A2S3IHF70.0A0A2S3IHF7_9POAL; Uncharacterized protein
STRINGSb01g006020.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.24e-35TCP family protein