PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.I01426.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | LBD | ||||||||
Protein Properties | Length: 190aa MW: 20321.8 Da PI: 5.6988 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 115.6 | 3.1e-36 | 19 | 119 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk +rr+C++dCvlapyfpa++p+++a+v+++FGasnv ++l++lp +er +a+++++ eA+ r++dPvyG++g++ +lq +++ ++ ela Pahal.I01426.1 19 RCAACKNQRRRCSQDCVLAPYFPASDPQRYACVQRVFGASNVARMLQNLPIHERGKAADTMAVEAHRRVEDPVYGCAGIVGRLQGEIRAAQCELA 113 6********************************************************************************************** PP DUF260 96 llkeel 101 ++++++ Pahal.I01426.1 114 RTQAQI 119 *99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.669 | 18 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.2E-36 | 19 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MSTSSSTEAA AAASPGIRRC AACKNQRRRC SQDCVLAPYF PASDPQRYAC VQRVFGASNV 60 ARMLQNLPIH ERGKAADTMA VEAHRRVEDP VYGCAGIVGR LQGEIRAAQC ELARTQAQIA 120 VHAAAAARAR PAVDAAQLNA PAQAALPQQQ QEQCDALAMQ QDPFQGLDAL LVDDYRVDVN 180 LVDDEMNTD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-31 | 10 | 114 | 1 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-31 | 10 | 114 | 1 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796458.1 | 1e-134 | LOB domain-containing protein 24-like | ||||
Swissprot | P59467 | 3e-40 | LBD23_ARATH; LOB domain-containing protein 23 | ||||
Swissprot | P59468 | 3e-40 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A2S3IHC2 | 1e-132 | A0A2S3IHC2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J05299.1.p | 5e-91 | (Panicum virgatum) | ||||
STRING | Pavir.J09684.1.p | 2e-91 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5282 | 35 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 1e-36 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.I01426.1 |