PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.I01404.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 436aa MW: 49053.5 Da PI: 6.0591 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.9 | 2.7e-19 | 134 | 180 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +lv++v+q+G + W+ Ia++++ gR +kqc++rw+++l Pahal.I01404.1 134 KGQWTPEEDRKLVKLVEQFGLRKWSYIAQMLP-GRVGKQCRERWHNHL 180 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 53 | 8.1e-17 | 189 | 228 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W++eEd l++a+k+ G++ W+ Ia++++ gRt++++k++w+ Pahal.I01404.1 189 WSEEEDMVLIQAHKEVGNK-WAEIAKRLP-GRTENSIKNHWN 228 *******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 29.718 | 129 | 184 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.74E-32 | 131 | 227 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-15 | 133 | 182 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.6E-30 | 135 | 187 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 1.9E-18 | 137 | 194 | No hit | No description |
CDD | cd00167 | 1.07E-15 | 137 | 180 | No hit | No description |
PROSITE profile | PS51294 | 20.073 | 185 | 235 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-16 | 185 | 233 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-21 | 188 | 233 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.56E-14 | 189 | 231 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010183 | Biological Process | pollen tube guidance | ||||
GO:0045697 | Biological Process | regulation of synergid differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 436 aa Download sequence Send to blast |
MDFSCFQPNA GICNYLPFDS YMQQNGHYDF HPVDHPFEAI GDYISGGSMV PPATFNDLGH 60 QYFEEREIKK PIFNHASSIG HRFGPQLPLL TPKTEVSHLI ESGLGSYKAY EMSDRFVPRK 120 KTSSNSVKKP NVVKGQWTPE EDRKLVKLVE QFGLRKWSYI AQMLPGRVGK QCRERWHNHL 180 RPNIKKEIWS EEEDMVLIQA HKEVGNKWAE IAKRLPGRTE NSIKNHWNAT KRRQFARRRS 240 RTSSKGPKSG TLLQNYIKGL GIGPSKNVAP PAQPTLPPSS PATPGAKSAK VHEMLEHSPS 300 DILDSQGMLA VHEYNCSETD QSCEELLAPI CCGDFSVVDM CEGLFDTTED ASCFQVFTVG 360 DDVDMSYIFN HLDHAIKVDP EIDMEMMWDD DALVCGEPDG AGSAQMETVH VKEEMDLMEM 420 VAVTQKQKCC EAEKN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 9e-47 | 132 | 234 | 2 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 9e-47 | 132 | 234 | 2 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00442 | DAP | Transfer from AT4G18770 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243252 | 0.0 | AC243252.2 Panicum virgatum clone PV_ABa094-H10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796038.1 | 0.0 | transcription factor MYB41-like | ||||
TrEMBL | A0A2T8I062 | 0.0 | A0A2T8I062_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J02497.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2806 | 37 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 8e-62 | myb domain protein 98 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.I01404.1 |