PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I01395.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 415aa MW: 43210.9 Da PI: 4.8198

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I01395.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.9	2.2e-13	223	274	5	56
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 + +rrkq+NRe+ArrsR RK a + eLe v++L eN++L +l +++ Pahal.I01395.1 223 RLQRRKQSNRESARRSRSRKAAHLNELEAQVAQLRVENSSLLRRLADVNQKF 274 679**************************************98887777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.3E-15	219	283	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.254	221	276	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	9.9E-10	222	275	No hit	No description
Pfam	PF00170	4.1E-10	223	272	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.88E-9	223	272	No hit	No description
Pfam	PF12498	3.8E-51	290	407	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071215	Biological Process	cellular response to abscisic acid stimulus
GO:0071333	Biological Process	cellular response to glucose stimulus
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MERVFSVEEI PNPYWAPPQP QAAATGAVAA PGGGGGGAGA AWDAAGAMNR CSSEWYFQKF 60 LEEAVLDSPG PVAGVGRGRG GGGGVEAAES KPLGVAAAAA SGAVVDPVEY NAMLKQKLEK 120 DLAAVAMWRA SGVTPPERSA AGSSLPNVDV SHAGPFNPIG GNRIPVENKL AVAPVEESGP 180 QVVQNADILV KQATSSSSRE QSDDDDMEGE AETTGNANPV QQRLQRRKQS NRESARRSRS 240 RKAAHLNELE AQVAQLRVEN SSLLRRLADV NQKFNEAAVD NRVLKADVET LRAKVKMAED 300 SVKRVTGMNA LFPAVSDMSS LSMPFNGSPS DSTSDAAVPI QDDPNSYFAN PSEIGGNNGY 360 LPEMASSAQE DDDFVNAALA AGKIGRTASL QRVASLEHLQ KRMCGGPASS GSTS*

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MERVFSVEEI PNPYWAPPQP QAAATGAVAA PGGGGGGAGA AWDAAGAMNR CSSEWYFQKF  60
LEEAVLDSPG PVAGVGRGRG GGGGVEAAES KPLGVAAAAA SGAVVDPVEY NAMLKQKLEK  120
DLAAVAMWRA SGVTPPERSA AGSSLPNVDV SHAGPFNPIG GNRIPVENKL AVAPVEESGP  180
QVVQNADILV KQATSSSSRE QSDDDDMEGE AETTGNANPV QQRLQRRKQS NRESARRSRS  240
RKAAHLNELE AQVAQLRVEN SSLLRRLADV NQKFNEAAVD NRVLKADVET LRAKVKMAED  300
SVKRVTGMNA LFPAVSDMSS LSMPFNGSPS DSTSDAAVPI QDDPNSYFAN PSEIGGNNGY  360
LPEMASSAQE DDDFVNAALA AGKIGRTASL QRVASLEHLQ KRMCGGPASS GSTS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:11572990, ECO:0000269\|PubMed:9049271}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00040	PBM	Transfer from AT5G28770	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025793253.1	0.0	bZIP transcription factor RISBZ2-like
Swissprot	Q7X9A8	0.0	RSBZ2_ORYSJ; bZIP transcription factor RISBZ2
TrEMBL	A0A2S3IHB8	0.0	A0A2S3IHB8_9POAL; Uncharacterized protein
STRING	Pavir.J01091.1.p	0.0	(Panicum virgatum)
STRING	Si035062m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3488	38	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	9e-41	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pahal.I01395.1

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Yang D,Wu L,Hwang YS,Chen L,Huang N Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter. Proc. Natl. Acad. Sci. U.S.A., 2001. 98(20): p. 11438-43 [PMID:11572990] Cheng S,Wang Z,Hong M Rice bZIP protein, REB, interacts with GCN4 motif in promoter of Waxy gene. Sci. China, C, Life Sci., 2002. 45(4): p. 352-60 [PMID:18759022]