PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I01247.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Dof
Protein Properties Length: 405aa    MW: 40903.3 Da    PI: 9.4634
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I01247.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.91.1e-38114174262
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     +e  lkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+++
  Pahal.I01247.1 114 PEPGLKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTK 174
                     56789*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-36102172IPR003851Zinc finger, Dof-type
PfamPF027012.8E-32118172IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.609118172IPR003851Zinc finger, Dof-type
PROSITE patternPS013610120156IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MVFSSVPVYL DPPNWNQHQQ QQQQAHHGQQ LPSGSGGGGG VEGHAHHHQQ HHQLPPVPPP  60
GALMAPRPDM ATIVIAASGG GGGGGAGGGG PTGGSSVRPG SMTERARLAK IPQPEPGLKC  120
PRCESTNTKF CYFNNYSLSQ PRHFCKTCRR YWTRGGALRN VPVGGGCRRN KRTKSSKSNS  180
SSAASASATG GTSSSTSSTT TGGSSAAAAA AAIMPPQGGQ LPFLASLHHH LGGDHYSTGA  240
SRLGFPGLSS LDPVDYQLGA SGGVGLEQWR LPQIQQFPFL SRPDAVQPPM SGIYPFDVEG  300
HGDAAGFAGQ MLGGSKVPGS AGLITQLASV KMEDNPPSTA MISSPREFLG LPGNLQFWGG  360
GNGASGNNGG TANAGGGGGG GASAPSSSWV DLSGFNSPSS GNIL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC5824010.0KC582401.1 Sorghum bicolor dof4 protein (dof4) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792577.10.0dof zinc finger protein DOF2.4-like
SwissprotQ9M2U12e-49DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBLA0A2S3IGM60.0A0A2S3IGM6_9POAL; Uncharacterized protein
STRINGPavir.J14743.1.p1e-173(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48932961
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.23e-45OBF-binding protein 3