PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I01075.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

HSF

Protein Properties

Length: 522aa MW: 56453.4 Da PI: 4.6792

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I01075.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	113.7	1.2e-35	53	144	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+ye+++d+++++++sw +nsf+v+++ efa+++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++ Pahal.I01075.1 53 FLMKTYEMVDDPATDDVVSWGPGNNSFIVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKT 138 9*******************99*************************************999.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+k Pahal.I01075.1 139 INRRKP 144 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	8.57E-36	49	142	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	7.1E-62	49	142	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	7.4E-39	50	142	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	2.2E-19	53	76	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	3.5E-31	53	142	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.2E-19	91	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	92	116	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.2E-19	104	116	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009408	Biological Process	response to heat
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence Send to blast
MQGGVAAAAA AAAAAAATVT TAVAPPVAPA PAAATAHAAV GNGGAAAAPP PPFLMKTYEM 60 VDDPATDDVV SWGPGNNSFI VWNTPEFARD LLPKYFKHSN FSSFVRQLNT YGFRKVDPDR 120 WEFANEGFLR GQKHLLKTIN RRKPSLQGNS QPQQPQLQNA PLPACVEVGK FGLEEEIERL 180 KRDKNVLMQE LVRLRQQQQT TDHQLQTLGK RLQGMESRQQ QMMSFLAKAM QSPGFLAQFV 240 QQNENSRRRI VAVNKKRRLP KQDGGLDSES GSASLDGQIV KYQPMINEAA KAMLRKILKL 300 DASHRFESVG NSDDFLLENY MPAAQGFDSS SSTRNSGVTL AEVPANSGLP YVPASSGLSA 360 ICSSSVAPEI QCPVVLDNNS SNQVPNMSVV PPVSKIIAPG SDITLPEFPD LADIVPDDSD 420 IPGGPFGMPG PEFPLTEEGD DSIPIETDEI LYNDETQKLP AIVDSFWEQF LVGSPLSVDN 480 DEVDSGVLDT RETPQENGWN KVEHVANLTE QMGLLSPNHR G*

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence Send to blast

MQGGVAAAAA AAAAAAATVT TAVAPPVAPA PAAATAHAAV GNGGAAAAPP PPFLMKTYEM  60
VDDPATDDVV SWGPGNNSFI VWNTPEFARD LLPKYFKHSN FSSFVRQLNT YGFRKVDPDR  120
WEFANEGFLR GQKHLLKTIN RRKPSLQGNS QPQQPQLQNA PLPACVEVGK FGLEEEIERL  180
KRDKNVLMQE LVRLRQQQQT TDHQLQTLGK RLQGMESRQQ QMMSFLAKAM QSPGFLAQFV  240
QQNENSRRRI VAVNKKRRLP KQDGGLDSES GSASLDGQIV KYQPMINEAA KAMLRKILKL  300
DASHRFESVG NSDDFLLENY MPAAQGFDSS SSTRNSGVTL AEVPANSGLP YVPASSGLSA  360
ICSSSVAPEI QCPVVLDNNS SNQVPNMSVV PPVSKIIAPG SDITLPEFPD LADIVPDDSD  420
IPGGPFGMPG PEFPLTEEGD DSIPIETDEI LYNDETQKLP AIVDSFWEQF LVGSPLSVDN  480
DEVDSGVLDT RETPQENGWN KVEHVANLTE QMGLLSPNHR G*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	8e-27	40	142	16	129	Heat shock factor protein 1
5d5v_B	8e-27	40	142	16	129	Heat shock factor protein 1
5d5v_D	8e-27	40	142	16	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF184725	0.0	KF184725.1 Saccharum hybrid cultivar R570 clone BAC 133K20 complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025794615.1	0.0	heat stress transcription factor A-1-like
Swissprot	Q84T61	0.0	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A2S3IG21	0.0	A0A2S3IG21_9POAL; Uncharacterized protein
STRING	Pavir.Ia00087.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5097	31	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	1e-117	heat shock factor 3

Link Out ? help Back to Top
Phytozome	Pahal.I01075.1

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]