PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I00902.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 298aa    MW: 32483.1 Da    PI: 5.8428
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I00902.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.7e-112342741055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Pahal.I00902.2 234 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 274
                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.25224273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-13226280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-12229278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.9E-12230279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.38E-12233278No hitNo description
PfamPF000103.5E-8234274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEASEASWHS FDPSVAVEDS EAMAQLLAVQ YFGNEQKQPA PTAMYWPGCQ EADQYYGSAP  60
YHMQQPNSGE GCYDHAGYYY GSSTVTMTGD FFVPDEQVAD PSFMLDLNLD FEDQEGGVDV  120
PAACKRKQEN QKGESTACTV PKKKSRSTAV PAQRKGRNAQ SKKAQKGACS RGNQEESNGD  180
GNVQCSGDYL SDDDSLEMTA CSNVSSASRK SSPGGGKARA GRGAATDPQS LYARKRRERI  240
NERLKILQNL VPNGTKVDIS TMLEEAVQYV KFLQLQIKVG PRKILARIPC WCAETRA*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796821.10.0transcription factor bHLH54-like
TrEMBLA0A2S3IT630.0A0A2S3IT63_9POAL; Uncharacterized protein
TrEMBLA0A2T7CG430.0A0A2T7CG43_9POAL; Uncharacterized protein
STRINGPavir.Ia04640.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.12e-30root hair defective 6-like 4