PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I00784.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CAMTA
Protein Properties Length: 1032aa    MW: 115109 Da    PI: 5.7907
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I00784.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1178.21e-55191362118
            CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                     lke ++rwl++ ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kk+dgktv+E+he+LK g+++vl+cyYah+een++fq
  Pahal.I00784.1  19 LKEaRHRWLRPAEICEILKNYRNFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHERLKSGSIDVLHCYYAHGEENENFQ 113
                     45559****************************************************************************************** PP

            CG-1  96 rrcywlLeeelekivlvhylevk 118
                     rr+yw+Lee++ +ivlvhylevk
  Pahal.I00784.1 114 RRSYWMLEEDFMHIVLVHYLEVK 136
                     ********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143783.08515141IPR005559CG-1 DNA-binding domain
SMARTSM010767.9E-7818136IPR005559CG-1 DNA-binding domain
PfamPF038592.4E-4921135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.7E-7442527IPR013783Immunoglobulin-like fold
CDDcd001022.64E-4442529No hitNo description
PfamPF018333.3E-10442522IPR002909IPT domain
SuperFamilySSF812961.38E-18443528IPR014756Immunoglobulin E-set
CDDcd002041.63E-12623735No hitNo description
SuperFamilySSF484035.29E-16634737IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.9E-16637738IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.998643737IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.576643675IPR002110Ankyrin repeat
PROSITE profilePS500888.736676708IPR002110Ankyrin repeat
SuperFamilySSF525402.92E-8848900IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.07849871IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.169850879IPR000048IQ motif, EF-hand binding site
PfamPF006120.0029851870IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0022872894IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.578873897IPR000048IQ motif, EF-hand binding site
PfamPF006122.0E-4875894IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1032 aa     Download sequence    Send to blast
MAEARRYAIA PQLDVDQILK EARHRWLRPA EICEILKNYR NFRIAPEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKRD GKTVKEAHER LKSGSIDVLH CYYAHGEENE NFQRRSYWML  120
EEDFMHIVLV HYLEVKGGKS SSRIRGHDDM LQAARTDSPL SQLPSQTTEG ESSVSGQATE  180
YEETESDIYS GGAGYHPFSW TQQHENGGGP VMGASILSCY IPSPFVGNHQ GFLSTATTTD  240
LYSHGQDALP VALNEPALGI ALNGADNQLD PSSLNGLPDQ GIHRMPPPQI TDPSKQFPFT  300
EGPGIESFTF GEVYNGLGIK DADTVDTDEE SLWQLPGAIS SFPTEDSFQQ NGRSLEETIN  360
YPLLKTQSSG LSDILKDSFK KSDSFTRWMS KELGEVDDSQ IRSSSGVYWN SEETDNIIEA  420
SSRDQLDQFT VDPVLAQDQL FSISDFSPSW TYAGSKTRVL ITGRFLNSYE VQRCKWSCMF  480
GEVEVPAEIS ADGTLRCYSP SHKPGRVPFY VTCSNRLACS EIREFEFRPS NSKHMDVPSP  540
HDDANKTYLQ MRLDDLLSLG QDEYQATVSN PTKEMIDLSK KISSLMTDND SWSELLKLAC  600
DNELATDDKQ DQFFENRLKE KLHIWLVHKA GDGGKGPSVL DEEGQGVLHL AAALGYDWAI  660
RPTISAGVSI NFRDAHGWTA LHWAAFCGRE RTVVALIALG AAPGALTDPT LDFPTGSTPA  720
DLASANGYKG ISGFLAESAL ISHLQTLDLK ETMGSNASEI SGLPGIGDVT ERRASPLAGE  780
GLLAGSMGDS LGAVRNAAQA AARIYQVFRM QSFQRKQAVQ YEDDNGAISD DRALSLLSVK  840
PSKPGQLDPL HAAATRIQNK YRGWKGRKEF LLIRQRIVKI QAHVRGHQVR KHYRKIIWSV  900
GIVEKIILRW RRKGAGLRGF RSTEGAVEGT SSSRSDLIQN KPAQDDYDFL QQGRKQTEER  960
LQKALARVKS MVQYPDARDQ YQRILTVVTR LQESQALQEK MLESSTDMDE GFVMSEFQKL  1020
WDDDMPMPGN I*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793890.10.0calmodulin-binding transcription activator 3-like isoform X2
TrEMBLA0A2S3ITE50.0A0A2S3ITE5_9POAL; Uncharacterized protein
STRINGSi034076m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains