PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I00705.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 286aa    MW: 31186 Da    PI: 6.5336
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I00705.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.4e-17103153155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++y+GVr+++ +grW+AeIrdp+    + +r +lg+f taeeAa+a++  +++++g
  Pahal.I00705.1 103 KKYRGVRYRR-SGRWAAEIRDPR----QgRRAWLGTFCTAEEAARAYDCEARRIRG 153
                     59******99.7*********94....25********************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.07E-26103161No hitNo description
PfamPF008472.1E-10104153IPR001471AP2/ERF domain
PROSITE profilePS5103222.181104161IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-20104162IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-28104161IPR001471AP2/ERF domain
SMARTSM003802.8E-32104167IPR001471AP2/ERF domain
PRINTSPR003671.5E-7105116IPR001471AP2/ERF domain
PRINTSPR003671.5E-7127143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MCGGAILAEL VPARVHRPLT VATLWPAAES GAAAGGKRKA ADVDELEAVT DDEEFEAEFQ  60
LFVDDEEPSP GASPESGGRR SKAAPFPAVS GRSVCTSPAP RVKKYRGVRY RRSGRWAAEI  120
RDPRQGRRAW LGTFCTAEEA ARAYDCEARR IRGQRARLNF PLPDEGASRR QRWHTPAAAI  180
DLNLPAVSDD DTMDVDADSD DARRAELGGE AVRSTLARIK ELITHGPHGE RIVSELTMNG  240
AAGALQYAAL IAECSRQMEE IAALRRDLET RERQLARLVS NVMLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-16103162464ATERF1
3gcc_A2e-16103162464ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796393.10.0ethylene-responsive transcription factor RAP2-12-like
TrEMBLA0A2S3ITM30.0A0A2S3ITM3_9POAL; Uncharacterized protein
STRINGPavir.Ia04390.1.p1e-162(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136642229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.18e-20ethylene-responsive element binding protein