PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I00621.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 456aa    MW: 49546 Da    PI: 8.7278
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I00621.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.31.1e-14174233155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+++GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Pahal.I00621.2 174 SQFRGVTRHRWTGRYEAHLWDnTCRkEGqtRKgRQVYLGGYDREEKAARAYDLAALKYWG 233
                     789******************544454478446*************************98 PP
2AP246.78.2e-15278327355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Pahal.I00621.2 278 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 327
                     9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.31E-16174243IPR016177DNA-binding domain
CDDcd000188.70E-20174243No hitNo description
SMARTSM003802.9E-28175247IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-15175242IPR001471AP2/ERF domain
PROSITE profilePS5103218.795175241IPR001471AP2/ERF domain
PfamPF008473.6E-11175233IPR001471AP2/ERF domain
PRINTSPR003676.9E-6176187IPR001471AP2/ERF domain
CDDcd000181.75E-23276337No hitNo description
SuperFamilySSF541717.19E-18276337IPR016177DNA-binding domain
SMARTSM003802.9E-33277341IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-18277335IPR001471AP2/ERF domain
PROSITE profilePS5103219.203277335IPR001471AP2/ERF domain
PfamPF008471.1E-9278327IPR001471AP2/ERF domain
PRINTSPR003676.9E-6317337IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MSVTCSNKSS SSSLYDSCGH ADQAKYHEVH DLQPFSGGSY FHDHGHGSSG IGLGINMNAP  60
PCSGFPDHQH HHHQFLSHHG EYFLGTPANP SQPPGGAMPS MPVYSAGGGG GVVSGSMSIS  120
GIKSWLREAM YVPPERSAAL SLSVTDVPAE PPQLLPAPMP VARKPAQTFG QRTSQFRGVT  180
RHRWTGRYEA HLWDNTCRKE GQTRKGRQVY LGGYDREEKA ARAYDLAALK YWGPSTHINF  240
PLSHYEKELE EMKHMSRQEF IAHLRRNSSG FSRGASMYRG VTRHHQHGRW QARIGRVAGN  300
KDLYLGTFST QEEAAEAYDI AAIKFRGLNA VTNFDISKYD VKRICASTHL IGNDAACRRS  360
PTRPPDAPAA LPERQSSDAP RGDQGGAASD NSDTSDGHRG AHLLHGLQYS QHPMKFEAGE  420
GSSGGGSWMT AAAARPVSGV VPSVHQLPVF ALWND*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0557670.0BT055767.2 Zea mays full-length cDNA clone ZM_BFb0180B22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796834.10.0AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A2T8I6840.0A0A2T8I684_9POAL; Uncharacterized protein
STRINGPavir.Ia04350.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-119AP2 family protein