PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I00621.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 532aa    MW: 57030.1 Da    PI: 8.1459
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I00621.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.64.9e-11253309155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+++GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  Pahal.I00621.1 253 SQFRGVTRHRWTGRYEAHLWDnTC-RKegQTrKGRQ-GGYDREEKAARAYDLAALKYWG 309
                     789******************333.44555535555.779999**************98 PP
2AP246.41e-14354403355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Pahal.I00621.1 354 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 403
                     9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.92E-14253319IPR016177DNA-binding domain
CDDcd000181.03E-16253319No hitNo description
PfamPF008474.2E-8254309IPR001471AP2/ERF domain
SMARTSM003801.4E-21254323IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-12254318IPR001471AP2/ERF domain
PROSITE profilePS5103216.95254317IPR001471AP2/ERF domain
PRINTSPR003679.0E-6255266IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18352413IPR016177DNA-binding domain
CDDcd000182.80E-23352413No hitNo description
SMARTSM003802.9E-33353417IPR001471AP2/ERF domain
PROSITE profilePS5103219.203353411IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-18353411IPR001471AP2/ERF domain
PfamPF008471.4E-9354403IPR001471AP2/ERF domain
PRINTSPR003679.0E-6393413IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MDMNNGWLGF SLSPSAGRGA YGGGGGASGS GDGEGSCSSP VAASPLVAMP LQSDGRLPYS  60
STSDWRHAAE AKGPKLEDFM SVTCSNKSSS SSLYDSCGHA DQAKYHEVHD LQPFSGGSYF  120
HDHGHGSSGI GLGINMNAPP CSGFPDHQHH HHQFLSHHGE YFLGTPANPS QPPGGAMPSM  180
PVYSAGGGGG VVSGSMSISG IKSWLREAMY VPPERSAALS LSVTDVPAEP PQLLPAPMPV  240
ARKPAQTFGQ RTSQFRGVTR HRWTGRYEAH LWDNTCRKEG QTRKGRQGGY DREEKAARAY  300
DLAALKYWGP STHINFPLSH YEKELEEMKH MSRQEFIAHL RRNSSGFSRG ASMYRGVTRH  360
HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGLNAVTNF DISKYDVKRI  420
CASTHLIGND AACRRSPTRP PDAPAALPER QSSDAPRGDQ GGAASDNSDT SDGHRGAHLL  480
HGLQYSQHPM KFEAGEGSSG GGSWMTAAAA RPVSGVVPSV HQLPVFALWN D*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0557670.0BT055767.2 Zea mays full-length cDNA clone ZM_BFb0180B22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796834.10.0AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A3L6SCK60.0A0A3L6SCK6_PANMI; Uncharacterized protein
STRINGPavir.Ib00475.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-113AP2 family protein