PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I00615.4
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YA
Protein Properties Length: 238aa    MW: 26109.9 Da    PI: 9.3442
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I00615.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1071.6e-33133189158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RRq Rakle+e+kl  ksrkpylheSRh hA++R+Rg+gGrF
  Pahal.I00615.4 133 EEPIYVNAKQYHAILRRRQLRAKLEAENKL-VKSRKPYLHESRHLHAMKRARGTGGRF 189
                     69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.1E-38131192IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115239.221132192IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.9E-29134189IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.1E-24135157IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860137157IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.1E-24166189IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MRQNGTIMIQ FGHQMPDYDS PATQSTSESH QEVSGMSEGS LNDHNDQSGN HDGYSKSDEN  60
KMMSALSLGN PETAYVHPKT DRSQSFAISY PYADSYYGGA VAAYGQHAIQ MHPQLVGMVS  120
SSRVPLPIEP AAEEPIYVNA KQYHAILRRR QLRAKLEAEN KLVKSRKPYL HESRHLHAMK  180
RARGTGGRFL NTKQQSDSPG GGGTSDAQRM PANGGLFTKH EHNLPPGDRH YHARGGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-24133199267NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792633.11e-176nuclear transcription factor Y subunit A-7-like isoform X3
SwissprotQ9LVJ71e-42NFYA6_ARATH; Nuclear transcription factor Y subunit A-6
TrEMBLA0A2S3ITR11e-175A0A2S3ITR1_9POAL; Uncharacterized protein
STRINGPavir.Ib00471.1.p1e-166(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.12e-41nuclear factor Y, subunit A6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]