PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I00615.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YA
Protein Properties Length: 242aa    MW: 26485.4 Da    PI: 8.6975
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I00615.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA106.91.6e-33137193158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RRq Rakle+e+kl  ksrkpylheSRh hA++R+Rg+gGrF
  Pahal.I00615.3 137 EEPIYVNAKQYHAILRRRQLRAKLEAENKL-VKSRKPYLHESRHLHAMKRARGTGGRF 193
                     69****************************.**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.1E-38135196IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115239.221136196IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.1E-29138193IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.1E-24139161IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860141161IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.1E-24170193IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MLPPHLTENG TIMIQFGHQM PDYDSPATQS TSESHQEVSG MSEGSLNDHN DQSGNHDGYS  60
KSDENKMMSA LSLGNPETAY VHPKTDRSQS FAISYPYADS YYGGAVAAYG QHAIMHPQLV  120
GMVSSSRVPL PIEPAAEEPI YVNAKQYHAI LRRRQLRAKL EAENKLVKSR KPYLHESRHL  180
HAMKRARGTG GRFLNTKQQS DSPGGGGTSD AQRMPANGGL FTKHEHNLPP GDRHYHARGG  240
A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-24137203267NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792631.11e-179nuclear transcription factor Y subunit A-7-like isoform X2
SwissprotQ9LVJ72e-44NFYA6_ARATH; Nuclear transcription factor Y subunit A-6
TrEMBLA0A2S3ITU71e-178A0A2S3ITU7_9POAL; Uncharacterized protein
STRINGPavir.Ib00471.1.p1e-170(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.13e-43nuclear factor Y, subunit A6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]