PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.I00615.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NF-YA | ||||||||
Protein Properties | Length: 237aa MW: 25981.8 Da PI: 9.3442 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 107 | 1.6e-33 | 132 | 188 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rakle+e+kl ksrkpylheSRh hA++R+Rg+gGrF Pahal.I00615.2 132 EEPIYVNAKQYHAILRRRQLRAKLEAENKL-VKSRKPYLHESRHLHAMKRARGTGGRF 188 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.1E-38 | 130 | 191 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 39.221 | 131 | 191 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 6.9E-29 | 133 | 188 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.1E-24 | 134 | 156 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 136 | 156 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.1E-24 | 165 | 188 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MRQNGTIMIQ FGHQMPDYDS PATQSTSESH QEVSGMSEGS LNDHNDQSGN HDGYSKSDEN 60 KMMSALSLGN PETAYVHPKT DRSQSFAISY PYADSYYGGA VAAYGQHAIM HPQLVGMVSS 120 SRVPLPIEPA AEEPIYVNAK QYHAILRRRQ LRAKLEAENK LVKSRKPYLH ESRHLHAMKR 180 ARGTGGRFLN TKQQSDSPGG GGTSDAQRMP ANGGLFTKHE HNLPPGDRHY HARGGA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 3e-24 | 132 | 198 | 2 | 67 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792633.1 | 1e-174 | nuclear transcription factor Y subunit A-7-like isoform X3 | ||||
Swissprot | Q9LVJ7 | 1e-43 | NFYA6_ARATH; Nuclear transcription factor Y subunit A-6 | ||||
TrEMBL | A0A2S3ITS6 | 1e-174 | A0A2S3ITS6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib00471.1.p | 1e-164 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14020.1 | 2e-42 | nuclear factor Y, subunit A6 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.I00615.2 |
Publications ? help Back to Top | |||
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