PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I00594.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 86aa    MW: 9603.89 Da    PI: 9.3331
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I00594.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.3e-0811521454
                    HHHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS
             HLH 14 driNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54
                    d+iN+ +++L+ llP++s + ++ + s +  L++++ YIksL
  Pahal.I00594.1 11 DEINELISKLQALLPESSrRRNASRSSASKLLKETCSYIKSL 52
                    68**************6647777889***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.75152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-91171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-61152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-91167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MSGRRGRISD DEINELISKL QALLPESSRR RNASRSSASK LLKETCSYIK SLHREVDDLS  60
ERLSGLMATM DNDSPQAEII RSLLR*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0639071e-107BT063907.2 Zea mays full-length cDNA clone ZM_BFc0119B05 mRNA, complete cds.
GenBankEU9645851e-107EU964585.1 Zea mays clone 280170 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796146.14e-53transcription factor ILI3-like
SwissprotA2XD152e-34ILI3_ORYSI; Transcription factor ILI3
SwissprotQ10R472e-34ILI3_ORYSJ; Transcription factor ILI3
TrEMBLA0A2S3ITT08e-52A0A2S3ITT0_9POAL; Uncharacterized protein
TrEMBLA0A2T7CH398e-52A0A2T7CH39_9POAL; Uncharacterized protein
STRINGPavir.Ib00458.1.p2e-52(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92838145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.15e-25bHLH family protein