PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I00579.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 435aa MW: 46233.8 Da PI: 8.0047

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I00579.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.4	8.9e-40	102	162	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k++s Pahal.I00579.1 102 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSKSAS 162 7899*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-27	98	151	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.8E-32	104	160	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.929	106	160	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	108	144	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MAECRVGGGG GDCLIKLFGK TIPVPEVAAA AAVAVGEADK DIQQSGSSTS EPKGQENTLQ 60 DSTGSPLQQE VADTEDSSAA KNSSGDQQQG EAANQKEKLK KPDKILPCPR CNSMDTKFCY 120 YNNYNINQPR HFCKNCQRYW TAGGAMRNVP VGAGRRKSKS ASAASHFLQR VRAALPIDPL 180 CTAAKTNGTV LSFGSDMSSL DLSEQMKHLK EKLVPITRIK SSDDRSVGSC TEGSAKGEDS 240 NQMNQKEKVT ADNSANVVQH PCMNGVTMWP FSCAPPPACY TSGIAIPFYP AAAAYWGCMV 300 PGAWNAPWPP HSLSESASSL STASPASTKS NCLTPGKRSR DSDEEGDTKG NGKVWVPKTI 360 RIDDADEVAR SSILSLIGIN GDKACKDSRG CKLARVFEQK EEAKTATHTV INSLPFLQGN 420 PAALSRSLTF QEGS*

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MAECRVGGGG GDCLIKLFGK TIPVPEVAAA AAVAVGEADK DIQQSGSSTS EPKGQENTLQ  60
DSTGSPLQQE VADTEDSSAA KNSSGDQQQG EAANQKEKLK KPDKILPCPR CNSMDTKFCY  120
YNNYNINQPR HFCKNCQRYW TAGGAMRNVP VGAGRRKSKS ASAASHFLQR VRAALPIDPL  180
CTAAKTNGTV LSFGSDMSSL DLSEQMKHLK EKLVPITRIK SSDDRSVGSC TEGSAKGEDS  240
NQMNQKEKVT ADNSANVVQH PCMNGVTMWP FSCAPPPACY TSGIAIPFYP AAAAYWGCMV  300
PGAWNAPWPP HSLSESASSL STASPASTKS NCLTPGKRSR DSDEEGDTKG NGKVWVPKTI  360
RIDDADEVAR SSILSLIGIN GDKACKDSRG CKLARVFEQK EEAKTATHTV INSLPFLQGN  420
PAALSRSLTF QEGS*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC169375	0.0	AC169375.4 Sorghum bicolor clone SB_BBc0020O07, complete sequence.
GenBank	HQ540086	0.0	HQ540086.1 Sorghum bicolor clone SbDof23 Dof-type zinc finger protein gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796665.1	0.0	cyclic dof factor 1-like
TrEMBL	A0A2S3ITV1	0.0	A0A2S3ITV1_9POAL; Uncharacterized protein
STRING	Pavir.Ia04317.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-52	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Pahal.I00579.1