PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I00507.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 383aa    MW: 42943.5 Da    PI: 5.0573
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I00507.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.12.4e-32491392101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+++++ d+++++++sw ++g+sfvv+d++ fa  +Lp++Fkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+++ll+ 
  Pahal.I00507.1  49 FLTKTFDLVADPATDQVVSWGRTGTSFVVWDPHVFAAVLLPRFFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEGFLRGQRQLLRL 134
                     9****************************************************************999.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     ikr++
  Pahal.I00507.1 135 IKRRR 139
                     ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.3E-5945138IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.1E-3645138IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.08E-3445138IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.5E-194972IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.9E-3049138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-198799IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434088112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-19100112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MDPLLPGMVT VKEEWPPSSP PPEEEVEDMD AAEAPRPMEG LHEVGPPPFL TKTFDLVADP  60
ATDQVVSWGR TGTSFVVWDP HVFAAVLLPR FFKHNNFSSF VRQLNTYGFR KIDPDRWEFA  120
NEGFLRGQRQ LLRLIKRRRA PSYLPGSQQQ ALGSCLEVGQ FGSLDEEMDR LKRDKSILLA  180
EVVKLRQEQQ STRAEMRAME ERLQHAEHKQ VQMMGFLARA LQSPDFFQQL AQHQERRREL  240
EDAFSRKRRR PIDAAPFEEA GGRVQPQQDV EPPPPPPPLS RAGGGFEAEL GGEPGTSELE  300
NLALNIQGLG KRRQDEKQAP GGETAELTDD FWEELLSEGM MGGGAGATVP VLPELEMRRQ  360
RPGRYVDALA QKLSSMSNTA AR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-254713818120Heat shock factor protein 1
5d5u_B7e-254713827129Heat shock factor protein 1
5d5v_B7e-254713827129Heat shock factor protein 1
5d5v_D7e-254713827129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132137RLIKRR
2235249RRRELEDAFSRKRRR
3245249RKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0556310.0BT055631.1 Zea mays full-length cDNA clone ZM_BFc0084J01 mRNA, complete cds.
GenBankJX4285380.0JX428538.1 Zea mays subsp. mays clone pUT3138 HSF13 HSF type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792158.10.0uncharacterized protein LOC112873415
SwissprotQ8H7Y61e-168HFA2D_ORYSJ; Heat stress transcription factor A-2d
TrEMBLA0A2S3IU080.0A0A2S3IU08_9POAL; Uncharacterized protein
STRINGPavir.Ib00391.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.16e-92heat shock transcription factor A6B