PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I00443.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family E2F/DP
Protein Properties Length: 381aa    MW: 40752.2 Da    PI: 5.901
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I00443.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.44.3e-27123209371
         E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     +++Lr++++k   ++ek+e+ g++t+neva+eLv+e                     d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Pahal.I00443.1 123 NRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEftdpnnnieapdpdnpnaqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 209
                     689*******...*****999************************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094045.5E-12815380IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.105.1E-45117215IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.8E-38121209IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023195.0E-25124209IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.76E-20124210IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.48E-43214317IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.56E-42216330No hitNo description
SMARTSM011387.9E-79216378IPR014889Transcription factor DP, C-terminal
PfamPF087817.5E-42217350IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MVSGVADNPD GEGGAQRPPP PVGARAALGT PPVSAGAAYS ASTSGGSAGS PSSRSEQHAP  60
DGGGKGAAPG AAAAASASTP ASESTFLRLN NLDINGDDAP SSQAPTSKKK KRGARAVGPD  120
KGNRGLRQFS MKVCEKVESK GRTTYNEVAD ELVAEFTDPN NNIEAPDPDN PNAQQYDEKN  180
IRRRVYDALN VLMAMDIISK DKKEIQWKGL PRTSISDIEE LKTELVGLKG RIEKKSAYLQ  240
ELQDQYVGLQ NLIQRNEQLY GSGNTPSGGV ALPFILVQTR PHATVEVEIS EDMQLVHFDF  300
NSTPFELHDD SYVLKEMQFC GREQHASTQE PISNGGESSS MSNIYWQQVQ HAGRPNNGTV  360
WLPGSPPIPG ILKGRVKHEH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B4e-35115214193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9655130.0EU965513.1 Zea mays clone 286553 transcription factor Dp-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798097.10.0transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-139DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2S3IU500.0A0A2S3IU50_9POAL; Uncharacterized protein
STRINGPavir.Ib00301.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-137Transcription factor DP