PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I00435.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 1508aa    MW: 166219 Da    PI: 6.309
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I00435.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.00113971422123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                      ++C    C++ F ++ +L+ H r+ +
  Pahal.I00435.1 1397 FQCDidLCDMAFETRAELNAHKRNiC 1422
                      899999****************9877 PP
2zf-C2H212.50.0004614221444323
                      ET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                      C+   Cgk+Fs++ +LkrH+ +H
  Pahal.I00435.1 1422 CTdeSCGKRFSSHKYLKRHQCVH 1444
                      77778***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005455.7E-122768IPR003349JmjN domain
PROSITE profilePS5118313.5922869IPR003349JmjN domain
PfamPF023754.4E-132962IPR003349JmjN domain
SMARTSM005581.6E-47222391IPR003347JmjC domain
PROSITE profilePS5118434.798222391IPR003347JmjC domain
SuperFamilySSF511974.67E-27227387No hitNo description
PfamPF023732.1E-36255374IPR003347JmjC domain
SMARTSM003554813971419IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.19614201449IPR007087Zinc finger, C2H2
SMARTSM003552.314201444IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028014221444IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.4E-614261450IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.83E-1014361478No hitNo description
PROSITE profilePS5015712.07114501479IPR007087Zinc finger, C2H2
SMARTSM003550.00114501474IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-1014511474IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028014521474IPR007087Zinc finger, C2H2
SuperFamilySSF576671.03E-814681503No hitNo description
Gene3DG3DSA:3.30.160.607.1E-1014751502IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.15714801507IPR007087Zinc finger, C2H2
SMARTSM003550.7914801506IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028014821506IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0045814Biological Processnegative regulation of gene expression, epigenetic
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0032452Molecular Functionhistone demethylase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1508 aa     Download sequence    Send to blast
MSPPPAVVAA AGPGETPVPA WLRGLPRAPE YRPTESEFAD PIAFLSRVER EAAAYGICKV  60
IPPYQRPSRR FVFAHLNRSL TSSSDAANPA VSGSSSSTAP SRPESAAVFT TRHQELGTPR  120
RGRPPPQVLK QVWQSGEQYT LEQFEAKSRA FSKVHLAGLR EPTPLEVESL FWKASADHPI  180
YIEYANDVPG SGFAAPPQSR RRKKRRREGD QVEEVEKGSG WRLSGSPWNL QAIARAPGSL  240
TRFMPDDVPG VTSPMVYIGM LFSWFAWHVE DHELHSLNFL HTGAPKTWYA VPGDRASELE  300
EVIRVHGYGG NPDRLASLAV LGEKTTLMSP DVLVARGVPC CRLVQYPGEF VVTFPRAYHI  360
GFSHGFNCGE AANFATPQWL KFAKEAAVRR AVMNYLPMLS HQQLLYLLAA SFIIRTPSVL  420
SGIRTSRLRD RRKEERELLV KQEFLQDMIN ENKLLCSFLK KKSIDNVVLW EPDLLPSSTV  480
LNSCSFGSKA PEKKSEDGCR IESSQCNHKD NSSFDGSVLM TGTQTKCMSA NSKSSDAASA  540
SVEKSDADTD DEDDLPFDLS IDSGSLTCVA CGILGYPFMA ILQPSREALE GISPVHREKF  600
KLSSEKEKSA YVLPCCPAGS NSGSSFVPNR PSCSVEQPCL ATPVEQANID HQNVKSRKDV  660
CLPENELAGP VQQHSDSSYY CRSENTLYSC SNWKKSDNTI PKDSLGPEVK QTGRCDINVQ  720
VVESCDGTIN WNTSSTFARP RIFCLQHALE IEELFEGKGG VHALIICHSD YTKLKALAIS  780
IAEEIEFQFD CTDVPLANAS KSDLHLINIS IDDEGHEEDG KDWTSQMGLN LKYCAKLRKE  840
TSGIQDQSPL SVWGLFSNPS PVSVVPNLKW LCRKARTPYK VIGVISSSST TAIAGEVKPE  900
VKKETGTTGN VCEDDNSQHI FQKDDLLQPS GLHHSDDRDN RPSCSKENDH DRHCLIDIPI  960
AVAEYPLKHQ VCEGPVSVST RNVTICSSDS QDSSLLATSP VDVTRYQGRT KSTELSCSST  1020
FCVQQFLNDE STSVEGSMNC ISNHEYLKSQ DVTLRCRDEC LQVQQDQEEM GLCNNRNRTS  1080
ADPCLKEGLA ISEEKHGGTV SAALENDEGC AKTSNCSDKT NESATVNPLE THDVGAVPVE  1140
QKTSCDEMTC SADVQRIITF GCLGSSDVPG STQPLSVPHD LMSDELQVDS HHCVVKAIEP  1200
ESNDSAKHGS PQIDYLVSED AQAASMTVLP VHDGISLHTG SNSFDILLGA LAEESKVTDA  1260
PGKDEVGKAS LTLMTLASND HSADEIAQGK IVEVAKRETI FGATKDNQQV DCPYDFCLSD  1320
LVSRSIGNSN RTDIICYFRR KRKRKKDSQS NTDSSQSLGS FVRSPCESLR PRTKPAVVET  1380
VEVSAGKKGK RAKVGSFQCD IDLCDMAFET RAELNAHKRN ICTDESCGKR FSSHKYLKRH  1440
QCVHSEIRPF KCPWDGCEMT FKWLWAQTEH VRVHTGERPY KCSAPSCGQT FRYVSDYSRH  1500
RKKFNHY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A3e-73154272376Transcription factor jumonji (Jmj) family protein
6ip4_A3e-73154272376Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199204RRRKKR
213381343RRKRKR
313381344RRKRKRK
413391344RKRKRK
513391345RKRKRKK
613391346RKRKRKKD
713411345RKRKK
813411346RKRKKD
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793314.10.0lysine-specific demethylase SE14
SwissprotQ10RP40.0SE14_ORYSJ; Lysine-specific demethylase SE14
TrEMBLA0A2S3IU850.0A0A2S3IU85_9POAL; Uncharacterized protein
STRINGSi033886m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99393437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.11e-170C2H2 family protein