PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.I00423.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | LBD | ||||||||
Protein Properties | Length: 179aa MW: 18499.8 Da PI: 6.2264 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 119.6 | 1.7e-37 | 13 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkCa++Cv+ap+f+ae+ +++fa++hk+FGasn kll+++ + +r++a+++++yeA+ar+rdP+yG+v++i++lqqq+++l+ ++ Pahal.I00423.1 13 PCGACKFLRRKCAAECVFAPHFCAEDgAAQFAAIHKVFGASNAAKLLQQVAPADRSEAAATVTYEAQARLRDPIYGCVAHIFALQQQVASLQMQV 107 7***********************9989*****************************************************************99 PP DUF260 95 allkee 100 ++k++ Pahal.I00423.1 108 LQAKAQ 113 888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.593 | 12 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-36 | 13 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MASSGSGGTP GSPCGACKFL RRKCAAECVF APHFCAEDGA AQFAAIHKVF GASNAAKLLQ 60 QVAPADRSEA AATVTYEAQA RLRDPIYGCV AHIFALQQQV ASLQMQVLQA KAQVAQTMAA 120 AGGPQAAGSP LLQRWPLEPE SLSTQSSGCY SAPSCDGSAS LQEMYCGFGE QEEGSYTR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-33 | 11 | 116 | 9 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-33 | 11 | 116 | 9 | 113 | LOB family transfactor Ramosa2.1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF051734 | 0.0 | EF051734.1 Zea mays RTCN mRNA, complete cds. | |||
GenBank | KJ728375 | 0.0 | KJ728375.1 Zea mays clone pUT6657 LOB transcription factor (LOB21) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797295.1 | 1e-126 | LOB domain-containing protein 16-like | ||||
Swissprot | Q9SLB7 | 6e-55 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | A0A2S3IU76 | 1e-125 | A0A2S3IU76_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7CHL5 | 1e-125 | A0A2T7CHL5_9POAL; Uncharacterized protein | ||||
STRING | Si037727m | 1e-112 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10262 | 33 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 1e-43 | lateral organ boundaries-domain 29 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.I00423.1 |