PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I00311.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 336aa    MW: 36103.7 Da    PI: 4.6249
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I00311.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.6e-12166208754
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  A++Y+k+L
  Pahal.I00311.1 166 MAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDAIDYVKEL 208
                     79*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.504159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-16164236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-13165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-16166226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.92E-5166213No hitNo description
PfamPF000104.7E-10166208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MELDEETFLD ELMSLRREAA AAAPWQGYPA GSGAMMSDLL FYGADARSGG GGMDLPPFQE  60
LAPMPPAAPP HEEFNFDCLS EVCNPYRGSV AAPGEAAPGQ TLVAPLHDAM VEEETSGDKG  120
QYYGGGGSPT FVFGGGAGES SEMAIRGVGG PHHRSKLHGA PSKNLMAERR RRKRLNDRLS  180
MLRSIVPKIS KMDRTSILGD AIDYVKELTE RIKALEEEIG ASPEDLNLLN TLKDSSNSNN  240
EMMVRNSTKF DVEKRGNGST RIEICCPTNP GVLLSTVSAL EVLGLEIEQC VVSCFSDFGM  300
QASCLQEEDG KRQVISTDEI KQALFRSAGY GGRCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167174ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9629810.0EU962981.1 Zea mays clone 247054 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796859.10.0transcription factor bHLH61-like
SwissprotQ9LSL13e-64BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A2S3IUG70.0A0A2S3IUG7_9POAL; Uncharacterized protein
STRINGSi036470m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.13e-66beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]