PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I00295.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 316aa    MW: 35201.8 Da    PI: 7.2726
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I00295.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.72.3e-49131393128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 
                     pGfrFhPt+eel+++yL + v+gkkl++ ++i +++iy+++PwdLp+++k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d+++ s+  
  Pahal.I00295.1  13 PGFRFHPTEEELLDFYLDRMVHGKKLHF-DIIGTLNIYRHDPWDLPAMAKIGEREWYFFVPRDRKAGSGGRPNRTTERGFWKATGSDRAIRSSad 106
                     9*************************99.99***************99999****************************************9977 PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++glkktLvfy+grap+g+ktdWvm+eyrl
  Pahal.I00295.1 107 AKRVIGLKKTLVFYQGRAPRGTKTDWVMNEYRL 139
                     7888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-585166IPR003441NAC domain
PROSITE profilePS5100555.44411166IPR003441NAC domain
PfamPF023652.6E-2513139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MAGASMEVEQ DLPGFRFHPT EEELLDFYLD RMVHGKKLHF DIIGTLNIYR HDPWDLPAMA  60
KIGEREWYFF VPRDRKAGSG GRPNRTTERG FWKATGSDRA IRSSADAKRV IGLKKTLVFY  120
QGRAPRGTKT DWVMNEYRLP DSGAGRGART PPPPKEDMVL CKIYRKATPL KELEQRASAM  180
EEMQRRSNAP YYTNPARAPQ VQAAASAGDD YLSSDDAHDS FLFPVSSSSA PSGDSYSPPM  240
EAKQEADATV TVASMSLMQA ANMGIVQPPA VRHGDLPCLQ VPTNHGVLDW MQDLSQLRSP  300
WQDQFFLSPL AHLLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-48716810170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1070900.0AK107090.1 Oryza sativa Japonica Group cDNA clone:002-121-G12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795753.10.0NAC domain-containing protein 22
SwissprotQ10S651e-146NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A2S3IUX30.0A0A2S3IUX3_9POAL; Uncharacterized protein
STRINGPavir.J24394.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP177038105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.11e-85NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]